Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1521 122 1e-22 seq2869 95.1 2e-14 >seq1521 Length=375746 Score = 122 bits (134), Expect = 1e-22 Identities = 164/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||||||||| | || || || || || || ||||| | || ||||| | Sbjct 339855 CCTCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCT 339796 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | ||||| |||| |||||||| || || ||||| ||||||| Sbjct 339795 TCAGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGG 339736 Query 42207 CAATAAGTCTCTCTCCATAACCGGC--ACT-GTCATGTATCCACTTTTGAGCCCAATCGG 42263 | | | |||||||||| | | || || |||| |||||||| ||||| || | Sbjct 339735 CCACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCACCGATCCACTTAATGGCCCAGTCTG 339676 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 |||||||||| ||||| |||| || || |||||||| ||||| || Sbjct 339675 CCTTCTTTTTGACACATGGCAAGGTCTCAATGGCATTGAAGAGGTA 339630 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| || |||||||| |||||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 340558 CATGACGCCCATTTTCTGGTATTCCCCGACACGCTTTTCAAAGAAATTTGTCTTTCCTTC 340499 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAA 41867 ||| ||||| | |||||| || ||||| || || ||||| |||| Sbjct 340498 CAAGGATATGTGTTCCATAAAGTCAAAAGGGTTCTCGACATTGTAAA 340452 Score = 95.1 bits (104), Expect = 2e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||| | || ||||| || | | || |||||||| || || |||||||| || || Sbjct 339331 TCTTTGATGTAGGTATCAATGAGTAAGCTGTACATTTCGGAGTGGATGTTTTCCATAGCA 339272 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATC 42440 ||||| ||||| |||||||||| |||||| ||| ||||||||||| ||| |||| Sbjct 339271 ATCTGGAATCCATAGAAACATCGGGCCTCTGTAGCCTGTACTTCTTTACTGAATC 339217 >seq2869 Length=866877 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 71375 ATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATG 71434 ||||| || || || || || || || ||| || | |||||| || |||||||| | Sbjct 628693 ATCCTTGGTAGGTTTCATAAGGCCCATCCCGTTCTGCCAATTCACAGCTTGCCTCTAAAG 628752 Query 71435 CTCCATAATAAATGGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCCGGGCTATCA 71493 || |||| |||||||| || || || | || || | || || |||| ||| || ||| Sbjct 628753 CTGCATAGTAAATGGTCTCAAAGATTTGTTTGTTTAAGAGCT-GTGCCTCCTCACTTTCA 628811 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 |||||||| | | || || || ||||| || | || || || || || || || ||| Sbjct 628812 AATGGATACCTCATCAGGATGAAGGCGTCCGCCAGACCCTGTACACCTATTCCAATTGGT 628871 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGC 71579 || |||||| ||||||| | ||||| Sbjct 628872 CTATGTCTCATATTAGACCTCTCAGC 628897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671074946810840