Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1383 109 4e-19 >seq1383 Length=1214666 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | || || ||||| |||||||| ||||| || |||||||| ||| Sbjct 711256 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAG 711315 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||||| || ||| | ||||| | || || || ||| Sbjct 711316 AGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711375 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| || ||| ||| || |||| ||||| || || || Sbjct 711376 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACT 711435 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || |||||||| || ||||| ||||| ||||| ||||||||| Sbjct 711436 TCCAGTGTGATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCATA 711483 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | || || ||||| |||||||| || || || |||||||| || Sbjct 711705 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711764 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||||| ||||| || ||| | ||||| | || || || ||| Sbjct 711765 AGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711824 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| || ||| ||| || |||| ||||| || || || Sbjct 711825 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACT 711884 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || |||||||| || ||||| ||||| ||||| ||||||||| Sbjct 711885 TCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCATA 711932 Score = 102 bits (112), Expect = 6e-17 Identities = 167/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | || || ||||| |||||||| || || || |||||||| || Sbjct 711933 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711992 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| || ||||| || ||| | ||||| | || || || ||| Sbjct 711993 AGAGTGCGGCCATCTTCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 712052 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| || ||| ||| ||| |||| ||||| || ||||| Sbjct 712053 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCCGAGGGCTCTACT 712112 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATT-TGAAAA 15372 || | |||||||| || || || || || || ||||| || ||||| ||| |||||| Sbjct 712113 TCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGATTCTGAAAA 712170 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | || || ||||| |||||||| || || || |||||||| || Sbjct 711028 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711087 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||| || ||| | ||||| | || || || ||| Sbjct 711088 AGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711147 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| || ||| || ||| |||| ||||| || || || Sbjct 711148 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACT 711207 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || |||||||| || ||||| ||||| ||||| ||||||||| Sbjct 711208 TCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCATA 711255 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | || || |||||||||||||| || || || |||||||| || Sbjct 711484 CCTCCTCTCAGACGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711543 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||||| || ||| | ||||| | || || || ||| Sbjct 711544 AGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711603 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| || ||| ||| ||| |||| ||||| || || || Sbjct 711604 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCCACT 711663 Query 15317 TCTAAGGTAATGGTTTTACCTGTCA 15341 || | || |||||||| || |||| Sbjct 711664 TCCAGTGTGATGGTTTTGCCAGTCA 711688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362145392722119