Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1521 96.9 3e-15 >seq1521 Length=375746 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 12970 TTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCAT 13029 |||||||| | ||||||||||||||| || |||||||||||||| | | |||||||| Sbjct 340318 TTCTAGTAGTAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAGTTTGCAGTTCAT 340259 Query 13030 TCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC 13089 ||||| | || ||||| |||||| || | ||| | || ||| || | || || || Sbjct 340258 CCCTATGAGGTTACAAGGCAGAGCTTCCGTCAGAAATTCTTGTTCAATCTTGACGGCATC 340199 Query 13090 GATAACTATGTCTCTTATTACGTTCTCT-AATGGAGGATTTGATAGATGCTTAAACATCA 13148 | || || |||| | |||| | ||||| | ||| | ||||| | ||||||| Sbjct 340198 ACAGATGATTTCATATATT-CTTTCTTTGGATGGACGGTTTAAGAGATGGCTGAACATCA 340140 Query 13149 TACATGCAAAATCACAGTGCAATCC 13173 || || || || ||||| ||||| Sbjct 340139 GGCAGGCGAAGTCGCAGTGTAATCC 340115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430942170351918