Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1383 156 1e-32 seq2452 86.0 1e-11 seq1488 86.0 1e-11 seq1521 84.2 5e-11 >seq1383 Length=1214666 Score = 156 bits (172), Expect = 1e-32 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| || | | || | ||| | || ||||| |||||||| || ||||||| Sbjct 711026 TTCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAG 711085 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || || | ||| ||||| || ||||| || || || || | ||||| ||||| || | Sbjct 711086 AGAGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGG 711145 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | ||||||||||| ||||| ||||| ||||| |||||||| | ||| || || || | Sbjct 711146 GAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCA 711205 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || || || ||||| |||||||| ||||| || ||||| Sbjct 711206 CTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | | || | ||| | || ||||| |||||||| || |||||| Sbjct 711702 ATTCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCA 711761 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || |||||||| ||||| || || || || | ||||| ||||| || Sbjct 711762 GAGAGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGG 711821 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| ||||| || || || ||||| | ||| || || || Sbjct 711822 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCC 711881 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || ||||| |||||||| ||||| || ||||| Sbjct 711882 ACTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | || | ||| | || ||||| |||||||| || |||||| Sbjct 711930 ATACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCA 711989 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | ||||| || || || || | ||||| ||||| || Sbjct 711990 GAGAGAGTGCGGCCATCTTCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATCTGGG 712049 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| ||||| || || |||||||| | ||| || || ||| Sbjct 712050 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCCGAGGGCTCT 712109 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| ||||| ||||| || || || ||||| |||||||| Sbjct 712110 ACTTCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 712159 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | || | ||| | || |||||||||||||| || ||||| Sbjct 711253 ATACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCG 711312 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || ||||| || || || || | ||||| ||||| || Sbjct 711313 GAGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGG 711372 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| ||||| || || || ||||| | ||| || || || Sbjct 711373 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCC 711432 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || ||||| || ||||| ||||| || ||||| Sbjct 711433 ACTTCCAGTGTGATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | || | ||| | || ||||| |||||||| || |||||| Sbjct 711481 ATACCTCCTCTCAGACGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCA 711540 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || ||||| || || || || | ||||| ||||| || Sbjct 711541 GAGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGG 711600 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| ||||| || || |||||||| | ||| || || || Sbjct 711601 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCC 711660 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || || ||||| || || || ||||| Sbjct 711661 ACTTCCAGTGTGATGGTTTTGCCAGT 711686 >seq2452 Length=670277 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/165 (72%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 78487 AGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCAT 78546 ||| |||||||||| || | || || | |||||| | || || | ||||| | Sbjct 464656 AGCCTTATGGTGGTTCTACTTTTCGAAGTGCATAGAAATGATGGACACATTTTTCTTTGT 464597 Query 78547 CCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT 78606 || ||||||| ||||||||||| ||| ||||||| ||||| ||| || ||||| Sbjct 464596 GCTTAAAAAGAAAAACAATCAAATTAGCTTTTTACATGTGTATCACCATGCCACCATGTT 464537 Query 78607 --TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 | ||||| |||||||| ||||||||| | |||||||| ||| Sbjct 464536 CCCAATTTGG--TGGATAGGAATTAAATGGGTGGCAGGAGGGCAA 464494 >seq1488 Length=210545 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || |||||||||||||| || |||||||| | || || ||||| ||| Sbjct 27046 ATACCTTCCTTGTCCTGAATCTTTGCCTTGACATTTTCAATAGTGTCAGAGGGTTCCACC 27105 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || | ||| |||||||| |||||||| Sbjct 27106 TCAAGGGTGATGGTTTTACCCGTCAATGTCTTTACAAAGATCTGCAT 27152 >seq1521 Length=375746 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 || |||| ||| || |||| |||||| | | || ||| ||||||| || ||||||||| Sbjct 339210 GTGGAGAGATTCAGTAAAGAAGTACAGGCTACAGAGGCCCGATGTTTCTATGGATTCCAG 339269 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || ||||| ||||| || || || || |||||||| || | || ||||| || || Sbjct 339270 ATTGCTATGGAAAACATCCACTCCGAAATGTACAGCTTACTCATTGATACCTACAT 339325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151285412195572