Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1034 154 1e-32 seq5973 100 2e-16 >seq1034 Length=671361 Score = 154 bits (170), Expect = 1e-32 Identities = 260/370 (70%), Gaps = 5/370 (1%) Strand=Plus/Minus Query 25344 TTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTT-ATCCTCAG-TGTGGGAAAGGGTCTGG 25401 ||||| ||||| | | || |||| || |||| ||| || | ||||||||| || | Sbjct 244677 TTAAAATCGTCAATGTCCTTCACC-TCACGTTTGATCAAGAGCTTTGGGAAAGG-TCGAG 244620 Query 25402 GCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTC 25461 | | |||| ||||||| | ||||| ||||| | ||||| || |||||| || ||||||| Sbjct 244619 GTTTTCTCTGGAGCTGAATTTTCAGTGGTTCAATGTGATTCACGTAGACATGTGCGTCTC 244560 Query 25462 CCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGA 25521 |||| ||||| || || || || |||| || || || |||| || |||||||| || | Sbjct 244559 CCAGTGTGTGAACGAAATCACCAGGTTTGAGTCCTGTTACGTGGGCTATCATGTAAGTCA 244500 Query 25522 GGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGG 25581 | || | || || |||||||| || || || || | || || | | || || | |||| Sbjct 244499 GAAGCGAATAACTTGCGATGTTGAACGGCACTCCAAGACCGATAT-CGCCTGATCGCTGG 244441 Query 25582 TAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGA 25641 ||||||||| | ||||| ||| |||| | || || |||||| | | || || ||| Sbjct 244440 TAGAGCTGAGAGGAGAGTTCTCCGTCACAGACATAGAACTGAATGAAAGCGTGACAGGGA 244381 Query 25642 GGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCT 25701 || || || || | | | ||| || |||||||| | | ||||||| | || Sbjct 244380 GGCAGCGCCATCTTGTCTAGGTCACATGGATTCCAGGCAGAAATAATGATGCGACGATCG 244321 Query 25702 TCTGGGTTGT 25711 || ||||||| Sbjct 244320 TCAGGGTTGT 244311 Score = 89.7 bits (98), Expect = 3e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||||||||| || |||| | ||||||||| || || || || || ||||| Sbjct 243836 CATGTCTTTGTACTCTGCCCCAAAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTC 243777 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || || | || | | |||| ||||||| || || | || || |||||||| Sbjct 243776 GCCCTCCTCTCGATGGTTCAGGCCCAGGTTATCCAGGAATTCCCGCGACCCGTTGGCGTC 243717 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 25952 |||||| | ||||| |||||| || | ||| || || | || ||| ||||| Sbjct 243716 CCAGATGTGGACCCCTTTCTCGCTCAGTTTCTTGCCATTGGTACAGCCCTGGACAAACCA 243657 Query 25953 CAGCAGCTC 25961 |||||||| Sbjct 243656 TAGCAGCTC 243648 >seq5973 Length=2275 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||||||||| || |||| | ||||||||| || || || || || ||||| Sbjct 1701 CATGTCTTTGTACTCTGCCCCAAAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTC 1642 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || || | ||| | | ||| ||||| | ||||| | ||| ||||||||||| Sbjct 1641 GCCCTCCTCTCGGTGGTTCAGGCCGAGGTTATCAAGGAAGTCCCGGGACCCATTGGCGTC 1582 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 25952 |||||| | || || |||||| || | ||| || || | || ||| ||||| Sbjct 1581 CCAGATGTGGACACCTTTCTCGCTCAGTTTCTTGCCATTGGTACAGCCCTGGACAAACCA 1522 Query 25953 CAGCAGCTCC 25962 |||||||||| Sbjct 1521 CAGCAGCTCC 1512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340105850174607