Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq507 93.3 2e-14 seq1364 89.7 3e-13 seq1986 82.4 4e-11 seq1172 82.4 4e-11 >seq507 Length=613350 Score = 93.3 bits (102), Expect = 2e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| |||||||| || || ||||||| |||| |||||||||||||||||| Sbjct 454869 TAAAAAAT--AATTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGA 454926 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||| ||| |||||||||| |||||| Sbjct 454927 CGCTCTAACCGACTGAGCTAACCGGCCGT 454955 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| ||| |||||||||| || Sbjct 495011 GGGTCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCGACTGAGCTAACCGG 495070 Query 11528 CCGTCGACGATTGT 11541 |||| ||| |||| Sbjct 495071 CCGTTGACTCTTGT 495084 >seq1364 Length=855057 Score = 89.7 bits (98), Expect = 3e-13 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||| || || ||||||| |||| |||||||||||||||||||| Sbjct 727702 AAAAAT--AATTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGACG 727759 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| ||| |||||||||| |||||| Sbjct 727760 CTCTAACCGACTGAGCTAACCGGCCGT 727786 >seq1986 Length=802826 Score = 82.4 bits (90), Expect = 4e-11 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| ||| |||||||||| || Sbjct 233680 GGGTCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCGACTGAGCTAACCGG 233739 Query 11528 CCGT 11531 |||| Sbjct 233740 CCGT 233743 >seq1172 Length=210393 Score = 82.4 bits (90), Expect = 4e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | | ||||| || || ||||||| |||| |||||||||||||||||||| Sbjct 56620 AAAAAAAATAATGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGACG 56679 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| ||| |||||||||| |||||| Sbjct 56680 CTCTAACCGACTGAGCTAACCGGCCGT 56706 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261466791349084