Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1383 158 1e-33 seq1488 82.4 7e-11 >seq1383 Length=1214666 Score = 158 bits (174), Expect = 1e-33 Identities = 185/248 (75%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 94762 TTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTT 94821 ||||| ||||| ||| ||||||||||| ||||| ||||| || | || |||||||| Sbjct 711009 TTTTTAAAAATGTTAATTTCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTT 711068 Query 94822 TTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 || | ||| || || | ||||| || ||| ||||||||||| ||| | ||||| Sbjct 711069 CTGAATGTTGTAGTCAG--AGAGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATC 711126 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 ||||| ||||||||||| ||||| ||||||||||| | || || || ||||| | Sbjct 711127 AATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCA 711186 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | ||||| | | | || || || | ||||||||||| ||||| || ||||| |||||| Sbjct 711187 ATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAG 711246 Query 95000 ATCTGCAT 95007 || ||||| Sbjct 711247 ATTTGCAT 711254 Score = 158 bits (174), Expect = 1e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 94776 ACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAAT 94835 ||| ||||||||||| ||||| ||||| || | || |||||||| || | ||| || | Sbjct 711700 ACATTCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGT 711759 Query 94836 CGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTG 94895 | | |||| | ||| || |||||||| ||| | ||||| ||||| |||||||||| Sbjct 711760 CAGAGAGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTG 711819 Query 94896 GAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT 94955 | ||||| ||||||||||| | || || ||||||||| | | ||||| | | | | Sbjct 711820 GGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCT 711879 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 711880 CCACTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Score = 154 bits (170), Expect = 1e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||||| ||||| ||||| || | || ||||| || || | ||| | Sbjct 711248 TTTGCATACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGT 711307 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | |||| ||| ||||||||||| ||| | ||||| ||||| ||||||| Sbjct 711308 AGTCGGAGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGAT 711367 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| ||||||||||| | || || ||||||||| | | ||||| | | Sbjct 711368 CTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGG 711427 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 711428 GCTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 147 bits (162), Expect = 2e-30 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||||| ||||| ||||| || | || |||||||| || | ||| | Sbjct 711925 TTTGCATACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGT 711984 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | |||| | ||| |||| |||||| ||| | ||||| ||||| ||||||| Sbjct 711985 AGTCAGAGAGAGTGCGGCCATCTTCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGAT 712044 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| ||||||||||| | || || |||||||| | | ||||| | | Sbjct 712045 CTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCCGAGG 712104 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | || || |||| || ||||| || ||||| || || || ||||||||||||||| || Sbjct 712105 GCTCTACTTCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGATT 712163 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||||| ||||| ||||| || | || |||||||| || | ||| | Sbjct 711476 TTTGCATACCTCCTCTCAGACGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGT 711535 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | |||| ||| ||||||||||| ||| | ||||| ||||| ||||||| Sbjct 711536 AGTCAGAGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGAT 711595 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| ||||||||||| | || || |||||||| | | ||||| | | Sbjct 711596 CTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGG 711655 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 | || || || | ||||||||||| ||||| Sbjct 711656 GCTCCACTTCCAGTGTGATGGTTTTGCCAGT 711686 >seq1488 Length=210545 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| ||||||||||| | | |||||||| | | || || Sbjct 27046 ATACCTTCCTTGTCCTGAATCTTTGCCTTGACATTTTCAATAGTGTCAGAGGGTTCCACC 27105 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| ||||||||||| || || | || || ||||||||||||||| Sbjct 27106 TCAAGGGTGATGGTTTTACCCGTCAATGTCTTTACAAAGATCTGCATG 27153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448248281721240