Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3293 174 2e-39 >seq3293 Length=201333 Score = 174 bits (192), Expect = 2e-39 Identities = 201/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | | ||||||||| |||||||| || ||||||||||| ||||| Sbjct 63379 CGCCAAGCGTCACAGGAAAGTTCTTCGAGACAACATCCAGGGTATCACCAAGCCTGCTAT 63438 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||| | |||||||| || ||| |||||||| | |||| || || | Sbjct 63439 CCGTCGTCTTGCACGTAGAGGTGGAGTTAAACGTATCTCTGGACTCATCTACGAGGAAAC 63498 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| |||||||| ||| ||| |||| |||||| || || || || Sbjct 63499 CCGTGGTGTCTTGAAAGTCTTCCTCGAGAACGTCATCCGTGATGCAGTCACATACACAGA 63558 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| ||||| ||||||| | ||||| || |||| | || || Sbjct 63559 GCATGCCAAGAGAAAGACCGTCACAGCCATGGACGTTGTCTACGCTCTGAAGAGACAGGG 63618 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | || || || || ||||| || Sbjct 63619 ACGTACCCTCTACGGATTCGGCGGTTAAACT 63649 Score = 174 bits (192), Expect = 2e-39 Identities = 201/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | | ||||||||| |||||||| || ||||||||||| ||||| Sbjct 70919 CGCCAAGCGTCACAGGAAAGTTCTTCGAGACAACATCCAGGGTATCACCAAGCCTGCTAT 70978 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||| | |||||||| || ||| |||||||| | |||| || || | Sbjct 70979 CCGTCGTCTTGCACGTAGAGGTGGAGTTAAACGTATCTCTGGACTCATCTACGAGGAAAC 71038 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| |||||||| ||| ||| |||| |||||| || || || || Sbjct 71039 CCGTGGTGTCTTGAAAGTCTTCCTCGAGAACGTCATCCGTGATGCAGTCACATACACAGA 71098 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| ||||| ||||||| | ||||| || |||| | || || Sbjct 71099 GCATGCCAAGAGAAAGACCGTCACAGCCATGGACGTTGTCTACGCTCTGAAGAGACAGGG 71158 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | || || || || ||||| || Sbjct 71159 ACGTACCCTCTACGGATTCGGCGGTTAAACT 71189 Score = 174 bits (192), Expect = 2e-39 Identities = 201/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | | ||||||||| |||||||| || ||||||||||| ||||| Sbjct 78469 CGCCAAGCGTCACAGGAAAGTTCTTCGAGACAACATCCAGGGTATCACCAAGCCTGCTAT 78528 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||| | |||||||| || ||| |||||||| | |||| || || | Sbjct 78529 CCGTCGTCTTGCACGTAGAGGTGGAGTTAAACGTATCTCTGGACTCATCTACGAGGAAAC 78588 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| |||||||| ||| ||| |||| |||||| || || || || Sbjct 78589 CCGTGGTGTCTTGAAAGTCTTCCTCGAGAACGTCATCCGTGATGCAGTCACATACACAGA 78648 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| ||||| ||||||| | ||||| || |||| | || || Sbjct 78649 GCATGCCAAGAGAAAGACCGTCACAGCCATGGACGTTGTCTACGCTCTGAAGAGACAGGG 78708 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | || || || || ||||| || Sbjct 78709 ACGTACCCTCTACGGATTCGGCGGTTAAACT 78739 Score = 168 bits (186), Expect = 1e-37 Identities = 200/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | | ||||||||| |||||||| || ||||||||||| || || Sbjct 14247 CGCCAAGCGTCACAGGAAAGTTCTTCGAGACAACATCCAGGGTATCACCAAGCCTGCCAT 14306 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||| | |||||||| || ||| |||||||| | |||| || || | Sbjct 14307 CCGTCGTCTTGCACGTAGAGGTGGAGTTAAACGTATCTCTGGACTCATCTACGAGGAAAC 14366 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| |||||||| ||| ||| |||| |||||| || || || || Sbjct 14367 CCGTGGTGTCTTGAAAGTCTTCCTCGAGAACGTCATCCGTGATGCAGTCACATACACAGA 14426 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| ||||| ||||||| | ||||| || |||| | || || Sbjct 14427 GCATGCCAAGAGAAAGACCGTCACAGCCATGGACGTTGTCTACGCTCTGAAGAGACAGGG 14486 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | || || || || ||||| || Sbjct 14487 ACGTACCCTCTACGGATTCGGCGGTTAAACT 14517 Score = 168 bits (186), Expect = 1e-37 Identities = 200/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | | ||||||||| |||||||| || ||||||||||| || || Sbjct 55842 CGCCAAGCGTCACAGGAAAGTTCTTCGAGACAACATCCAGGGTATCACCAAGCCTGCCAT 55901 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||| | |||||||| || ||| |||||||| | |||| || || | Sbjct 55902 CCGTCGTCTTGCACGTAGAGGTGGAGTTAAACGTATCTCTGGACTCATCTACGAGGAAAC 55961 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| |||||||| ||| ||| |||| |||||| || || || || Sbjct 55962 CCGTGGTGTCTTGAAAGTCTTCCTCGAGAACGTCATCCGTGATGCAGTCACATACACAGA 56021 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| ||||| ||||||| | ||||| || |||| | || || Sbjct 56022 GCATGCCAAGAGAAAGACCGTCACAGCCATGGACGTTGTCTACGCTCTGAAGAGACAGGG 56081 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | || || || || ||||| || Sbjct 56082 ACGTACCCTCTACGGATTCGGCGGTTAAACT 56112 Score = 168 bits (186), Expect = 1e-37 Identities = 200/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | | ||||||||| |||||||| || ||||||||||| || || Sbjct 87086 CGCCAAGCGTCACAGGAAAGTTCTTCGAGACAACATCCAGGGTATCACCAAGCCTGCCAT 87145 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||| | |||||||| || ||| |||||||| | |||| || || | Sbjct 87146 CCGTCGTCTTGCACGTAGAGGTGGAGTTAAACGTATCTCTGGACTCATCTACGAGGAAAC 87205 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| |||||||| ||| ||| |||| |||||| || || || || Sbjct 87206 CCGTGGTGTCTTGAAAGTCTTCCTCGAGAACGTCATCCGTGATGCAGTCACATACACAGA 87265 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| ||||| ||||||| | ||||| || |||| | || || Sbjct 87266 GCATGCCAAGAGAAAGACCGTCACAGCCATGGACGTTGTCTACGCTCTGAAGAGACAGGG 87325 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | || || || || ||||| || Sbjct 87326 ACGTACCCTCTACGGATTCGGCGGTTAAACT 87356 Score = 152 bits (168), Expect = 8e-33 Identities = 183/246 (74%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | | |||| ||||||||||||| || ||||||||||| || | Sbjct 5433 CGCCAAGCGTCACAGGAAAG-TCTTGAGAGATAACATCCAGGGTATCACCAAGCCCGCCA 5491 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || | ||||||||||| ||| |||| ||| | |||| || |||| Sbjct 5492 TCCGTCGTCTTGCACGCAGAGGTGGAGTCAAACGTATCTCCGGACTCATCTACGAGGAGA 5551 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| ||||| | ||||| ||| ||| |||| ||| ||| || || || | Sbjct 5552 CCCGTGGTGTCCTGAAGGTGTTCCTTGAGAACGTCATCCGTGACGCTGTCACATACACAG 5611 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| ||||| ||||||| | ||||| || |||| | || | Sbjct 5612 AGCACGCCAAGAGGAAGACCGTCACAGCCATGGACGTTGTCTACGCTCTGAAGAGACAGG 5671 Query 16671 GCCGTA 16676 | |||| Sbjct 5672 GACGTA 5677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068197322687