Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1521 131 2e-25 seq2869 107 2e-18 >seq1521 Length=375746 Score = 131 bits (144), Expect = 2e-25 Identities = 166/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||||||||| || || || || || || || ||||| | || ||||| | Sbjct 339855 CCTCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCT 339796 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| ||| || |||| |||||||| || || ||||||||||||| Sbjct 339795 TCAGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGG 339736 Query 33446 CAATAAGTCTCTCTCCATAACCGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGG 33502 | | | |||||||||| | | || || |||| |||||||| ||||| || | Sbjct 339735 CCACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCACCGATCCACTTAATGGCCCAGTCTG 339676 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 |||||||||| ||||| |||| || || |||||||| ||||| || Sbjct 339675 CCTTCTTTTTGACACATGGCAAGGTCTCAATGGCATTGAAGAGGTA 339630 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| || |||||||| |||||||| || ||||| ||||| || ||||| || |||||||| Sbjct 340558 CATGACGCCCATTTTCTGGTATTCCCCGACACGCTTTTCAAAGAAATTTGTCTTTCCTTC 340499 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAA 33106 ||| ||||| | |||||| || ||||| || || ||||| |||| Sbjct 340498 CAAGGATATGTGTTCCATAAAGTCAAAAGGGTTCTCGACATTGTAAA 340452 >seq2869 Length=866877 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 62569 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62628 ||||| || || || || || || ||| || || | |||||| || |||||||| | Sbjct 628693 ATCCTTGGTAGGTTTCATAAGGCCCATCCCGTTCTGCCAATTCACAGCTTGCCTCTAAAG 628752 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCA 62687 | | || |||||||| || ||||| | || |||| || || |||| ||| || ||| Sbjct 628753 CTGCATAGTAAATGGTCTCAAAGATTTGTTTGTTTAAGAGCT-GTGCCTCCTCACTTTCA 628811 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 |||||||| | | || || || |||||||| | || || ||||| || || || ||| Sbjct 628812 AATGGATACCTCATCAGGATGAAGGCGTCCGCCAGACCCTGTACACCTATTCCAATTGGT 628871 Query 62748 CTATGTCTCTTATTAGAGATTTCAGC 62773 ||||||||| ||||||| | ||||| Sbjct 628872 CTATGTCTCATATTAGACCTCTCAGC 628897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622887560592440