Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1034 138 3e-27 seq2869 118 3e-21 seq7636 84.2 6e-11 >seq1034 Length=671361 Score = 138 bits (152), Expect = 3e-27 Identities = 253/369 (69%), Gaps = 4/369 (1%) Strand=Plus/Plus Query 111570 CAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGT 111629 || ||| ||| || || | |||| |||||| | |||||||||||||| |||| Sbjct 244268 CAAGGAGTTGACCAGTTGAAAAATGCCATTGAAAAGATTAAGAACAACCCTGACGATCGT 244327 Query 111630 CGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGT 111689 ||||| ||||| ||| ||||| ||| || | || || ||||| || || || ||| Sbjct 244328 CGCATCATTATTTCTGCCTGGAATCCATGTGACCTAGACAAGATGGCGCTGCCTCCCTGT 244387 Query 111690 CATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGA 111749 || | | ||||| ||||| ||||| || || | || | || |||||| Sbjct 244388 CACGCTTTCATTCAGTTCTATGTCTGTGACGGAGAACTCTCCTCTCAGCTCTACCAGCGA 244447 Query 111750 TCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGC 111809 || | ||||| |||||||| || ||||| || || |||||||| | || || |||| | Sbjct 244448 TCAGGCGATATCGGTCTTGGAGTGCCGTTCAACATCGCAAGTTATTCGCTTCTGACTTAC 244507 Query 111810 TTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCG 111869 | || || || | ||| |||||||| ||||| ||| ||||| | ||||| || Sbjct 244508 ATGATAGCCCACGTAACAGGACTCAAACCTGGTGATTTCGTTCACACACTGGGAGACGCA 244567 Query 111870 CATGTTTACACAAACCACATTGATGCACTTAAAACACAGTTGAAGCGCAAACCATACGA- 111928 ||||| ||| || |||||||| |||| |||| ||| | || | ||||| ||| Sbjct 244568 CATGTCTACGTGAATCACATTGAACCACTGAAAATTCAGCTCCAGAGAAAACC--TCGAC 244625 Query 111929 -TTTCCCAA 111936 |||||||| Sbjct 244626 CTTTCCCAA 244634 >seq2869 Length=866877 Score = 118 bits (130), Expect = 3e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||||| || |||||| ||||| || ||||| || ||| Sbjct 630273 GCCCAGCAGCTGTGGTACGCCATCATTGAGGCGCAGACAGAGACGGGGACACCGTACATG 630214 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||||||| || ||| | |||||||||||||| |||| || || || || Sbjct 630213 TTGTACAAAGATCACTGTAACAGGAAGTCCAACCAGCAAAACCTGGGAACTATCAAGTGT 630154 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 |||||||| ||||| ||||| | ||||||| | ||| || ||| Sbjct 630153 AGCAACCTGTGTACAGAGATCGTAGAATACAGCAGTCCAGATGAG 630109 >seq7636 Length=1619719 Score = 84.2 bits (92), Expect = 6e-11 Identities = 136/197 (69%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 62085 TCATAATATTCCGGGGCCATTTTGCGAAGATCAGGAAGTCTGGTCCATGGAATGGACTTG 62144 |||||||| |||| || ||||| | | || ||||| | | | ||||||| | | Sbjct 1566777 TCATAATACTCCGCTGCGATTTTCCTCACTTCCGGAAGACGGTTATATGGAATATAAGGG 1566836 Query 62145 AAATCATGATGCTCTACATGATAACCCGCGTTCCAAATAAACATATTAAAAGGTCCATAA 62204 |||||||||||||||| |||||||||| |||| | | || | ||| | || || ||| Sbjct 1566837 AAATCATGATGCTCTATATGATAACCCACGTTAAACAGAATAAAATTGAGCGGACCGTAA 1566896 Query 62205 TAAGAACTTGTTTCCTGATCTTCAGGCATTCCTGGGAAATTGTAATGTTCGGTAATAAAA 62264 || || | || |||| | | || | ||| ||||||||||| ||||||| Sbjct 1566897 TACGAGGTGGTGGCCTGTT---------TGCCGTGAAAAAGGTAATGTTCGGAAATAAAA 1566947 Query 62265 TGAGCAGCGAGGGGGTG 62281 || | || |||||||| Sbjct 1566948 TGTCCGGCCAGGGGGTG 1566964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303225700689338