Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1383 98.7 9e-16 >seq1383 Length=1214666 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||||| || ||||| | ||| || ||||| ||||||||||| || Sbjct 711705 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711764 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || |||||||| || || ||| |||| || | |||||| || || || Sbjct 711765 AGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711824 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || ||||| | || | || || | || ||| | Sbjct 711825 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACT 711884 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || || ||||| || || || ||||| Sbjct 711885 TCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||||| || ||||| | ||| || || || ||||||||||| ||| Sbjct 711256 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAG 711315 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| || || ||| |||| || | |||||| || || || Sbjct 711316 AGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711375 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || ||||| | || | || || | || ||| | Sbjct 711376 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACT 711435 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || || ||||| || || || ||||| Sbjct 711436 TCCAGTGTGATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||||| || ||||| | ||| || ||||| ||||||||||| || Sbjct 711933 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711992 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | ||| || || ||| |||| || | |||||| || || || Sbjct 711993 AGAGTGCGGCCATCTTCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 712052 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || ||||| | || | || || | || ||| | Sbjct 712053 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCCGAGGGCTCTACT 712112 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | |||| ||| || || || || || || || || |||||||||| Sbjct 712113 TCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGA 712161 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||||| || ||||| | ||| || ||||| ||||||||||| || Sbjct 711028 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711087 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| || || ||| |||| || | |||||| || || || Sbjct 711088 AGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711147 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || |||| | || | || || | || ||| | Sbjct 711148 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACT 711207 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || || ||||| || || || ||||| Sbjct 711208 TCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471967610674560