Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1521 118 1e-21 seq2869 98.7 1e-15 >seq1521 Length=375746 Score = 118 bits (130), Expect = 1e-21 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||||||||| | || || || || || || ||||| | || ||||| | Sbjct 339855 CCTCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCT 339796 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || |||| ||||| |||| ||||| || || || ||||| ||||||| Sbjct 339795 TCAGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGG 339736 Query 32803 CAATAAGTCTCTCTCCATAACCGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGG 32859 | | | |||||||||| | | || || |||| |||||||| ||||| || | Sbjct 339735 CCACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCACCGATCCACTTAATGGCCCAGTCTG 339676 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 |||||||||| ||||| |||| ||||| || ||||| ||||| || Sbjct 339675 CCTTCTTTTTGACACATGGCAAGGTCTCAATGGCATTGAAGAGGTA 339630 >seq2869 Length=866877 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 62424 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62483 ||||| || || || || || || ||| || || | |||||| || |||||||| | Sbjct 628693 ATCCTTGGTAGGTTTCATAAGGCCCATCCCGTTCTGCCAATTCACAGCTTGCCTCTAAAG 628752 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGCGCTTCCAGGCTATCA 62542 | | || |||||||| || ||||| | || |||| || || | || ||| || ||| Sbjct 628753 CTGCATAGTAAATGGTCTCAAAGATTTGTTTGTTTAAGAGCT-GTGCCTCCTCACTTTCA 628811 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 |||||||| | | || || || ||||| || | || || ||||| || || || ||| Sbjct 628812 AATGGATACCTCATCAGGATGAAGGCGTCCGCCAGACCCTGTACACCTATTCCAATTGGT 628871 Query 62603 CTATGTCTCTTATTAGAGATTTCAGC 62628 ||||||||| ||||||| | ||||| Sbjct 628872 CTATGTCTCATATTAGACCTCTCAGC 628897 Score = 86.0 bits (94), Expect = 8e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| || || || || ||||| | ||||| || | Sbjct 636252 CACTGAAAACTTTCTTGGTTTCTTTGTGGAGGTTGGAGACAGCTATGCGGGCGGCGAGGA 636311 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | || || || || || |||| || |||||| |||||| Sbjct 636312 TGGCATAGTCGGGGTGCTTGGTCGTCATGGTAGCAGCCGTTTCAGCGGCCAGATTGTCCA 636371 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCA 63974 ||| ||||| || || || || | ||| | ||| ||||||| Sbjct 636372 GTTCCACCGTGGTCACTCCTGGGTACAGTCCATTGATCACCTTCA 636416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633571337656400