Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1383 140 3e-28 seq2182 84.2 2e-11 >seq1383 Length=1214666 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || |||| || ||| |||||||| | ||||||||| | || Sbjct 711482 ATGCAAATCTTTGTCAAAACGCTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711423 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| ||||| || || || Sbjct 711422 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711363 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || ||||| ||||| | ||||||| ||||||| | ||| ||||| Sbjct 711362 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACTCTCTCCGACTACAAC 711303 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||||||||| || ||||| || | | || |||||||| Sbjct 711302 ATTCAGAAAGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGG 711256 Score = 138 bits (152), Expect = 1e-27 Identities = 174/237 (73%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || |||| || ||| |||||||| | ||||||||| | || Sbjct 711254 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711195 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | || ||||||||||| ||||| || || Sbjct 711194 GACACCATTGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAAGGAATTCCCCCAGA 711139 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| | | || || ||||| ||||| | ||||||| |||||| | || || Sbjct 711138 TCAGCAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACACTCTCTGACTA 711079 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||| ||||| || |||||||| || ||||| || | | || |||||||||||||| Sbjct 711078 CAACATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGGAAATTA 711022 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || |||| || ||| |||||||| | ||||||||| | || Sbjct 711931 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711872 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| ||||| || || || Sbjct 711871 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711812 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || ||||| ||||| ||||||||| |||||| | || ||||| Sbjct 711811 CAGAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 711752 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || |||||||| || ||||| || | | || |||||||||| Sbjct 711751 ATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGGAA 711703 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGC 25080 |||| || ||| |||||||| | ||||||||| | || ||||| || || | ||| Sbjct 711688 TGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCAGACACCATTGAAAATGTCAAGG 711629 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 || ||| ||||||||||| ||||| || || || ||| | | || || ||||| | Sbjct 711628 CCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCCGGTA 711569 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 |||| | ||||||| ||||||| | || ||||| ||||| || |||||||| || | Sbjct 711568 AACAGCTGGAAGATGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAATCCACCCTTC 711509 Query 25201 ATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || | | || |||||||| Sbjct 711508 ATTTGGTCTTGCGTCTGAGAGGAGG 711484 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| ||| | ||||| ||| | || Sbjct 712159 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACACTTGAAGTAGAGCCCTCG 712100 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| ||||| || || || Sbjct 712099 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 712040 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || ||||| ||||| || ||||||| |||||| | || ||||| Sbjct 712039 CAGAGATTGATCTTCGCCGGGAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTACAAC 711980 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || |||||||| || ||||| || | | || |||||||| Sbjct 711979 ATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGG 711933 >seq2182 Length=491743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| |||||||||||| || | ||||||||||| ||||| || || |||| || Sbjct 281289 AGGCATTCCCCCTGACCAACAGAGGCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCG 281230 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| | || ||||| || || || || ||||| || || || || || | || || Sbjct 281229 TACTCTCTCTGACTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTGAG 281170 Query 25220 AGGAGG 25225 |||||| Sbjct 281169 AGGAGG 281164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433287551404085