Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1521 102 9e-17 >seq1521 Length=375746 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| | |||||||||||| || ||||| || ||||||||||| | | ||| || Sbjct 339024 TACCAAATTTTCATTGACGATTCCATCACTGGCAGCAAAAAAAGCAAGAACATGGGAAAT 338965 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGAC 93594 || |||| || || || || || ||||| | |||||||| || |||||||| Sbjct 338964 GAAGTGTTGTTCCTCGTCCTTCAGAGCTTCCCAGTGACCCAGATCTTTGGAGAGATCGAC 338905 Query 93595 TTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATA 93654 || || ||||||| || || ||||| || || |||||||| | ||| ||||| || || Sbjct 338904 CTCCTCAGCAGTCCAGAATGAGGCTTCAGCCTTCTTGTACATTTGCCAGATGTCATGGTA 338845 Query 93655 TTGAATTGGAAATATGACAAAACG 93678 || ||||| || | ||||| || Sbjct 338844 CTGGATTGGGAAGACTACAAAGCG 338821 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/121 (77%), Gaps = 5/121 (4%) Strand=Plus/Minus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTT---ATTCATAACACC 92798 |||||| || ||||| || ||||| ||| | | ||| || |||||| || || Sbjct 340609 TTAGAAGTCGGCATCAAGAGTAAACTCATGCTTGGAGGAATTATTTCCATTCATGACGCC 340550 Query 92799 ACATTTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATA 92857 |||||| ||||||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 340549 -CATTTTCTGGTATTCCCCGACACGCTTTTCAAAGAAATTTGTCTTTCCTTCCAAGGATA 340491 Query 92858 T 92858 | Sbjct 340490 T 340490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556807487539160