Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1383 136 3e-27 >seq1383 Length=1214666 Score = 136 bits (150), Expect = 3e-27 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || ||||| |||| || |||||||| || | Sbjct 711254 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711195 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || || ||||| || || ||||| || ||||| Sbjct 711194 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711135 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| |||||| | || ||| ||||| |||| || |||||| Sbjct 711134 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACACTCTCTGACTACAAC 711075 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG--TTTTCCATTTT 22456 ||||| || ||||||||| | ||||| || ||||| || | ||||| || |||||| Sbjct 711074 ATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGGAAATTAACATTTT 711015 Query 22457 AAAA 22460 ||| Sbjct 711014 TAAA 711011 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || ||||| |||| || |||||||| || | Sbjct 711482 ATGCAAATCTTTGTCAAAACGCTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711423 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||| || || ||||| || ||||| Sbjct 711422 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711363 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| |||||| | || ||| ||||| ||||||| |||||| Sbjct 711362 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACTCTCTCCGACTACAAC 711303 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| |||||||||||| | ||||| || ||||| || | |||||| Sbjct 711302 ATTCAGAAAGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGGT 711255 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || ||||| |||| || |||||||| || | Sbjct 711931 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711872 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||| || || ||||| || ||||| Sbjct 711871 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711812 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| |||||| |||| ||| |||||| |||| || |||||| Sbjct 711811 CAGAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 711752 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||||||| | ||||| || ||||| || | ||||| Sbjct 711751 ATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGG 711705 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || | || |||||||| || || | Sbjct 712159 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACACTTGAAGTAGAGCCCTCG 712100 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||| || || ||||| || ||||| Sbjct 712099 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 712040 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| |||||||| || ||| |||||| |||| || |||||| Sbjct 712039 CAGAGATTGATCTTCGCCGGGAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTACAAC 711980 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||||||| | ||||| || ||||| || | |||||| Sbjct 711979 ATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGGT 711932 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || ||||| |||| || |||||||| || | || ||| | || || |||| Sbjct 711686 ACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCAGACACCATTGAAAATGTCAAGGCC 711627 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||| || || ||||| || ||||| || | | || || ||||| ||| Sbjct 711626 AAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCCGGTAAA 711567 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || ||| ||||| |||| || ||||||||||| || ||||||||| | ||| Sbjct 711566 CAGCTGGAAGATGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAATCCACCCTTCAT 711507 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || | |||||| Sbjct 711506 TTGGTCTTGCGTCTGAGAGGAGGT 711483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419688820883335