Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1383 96.9 2e-15 >seq1383 Length=1214666 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || ||||||||||| || ||||| ||| || || Sbjct 711254 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711195 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || || || || ||||| || | || | | || Sbjct 711194 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711135 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 |||||| | ||||| || || ||||| || |||||| | | ||| | | || |||| Sbjct 711134 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACACTCT--CTGACTACA 711077 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 | |||||||||||||| || || ||| |||| || ||| | |||||||| ||||| Sbjct 711076 ACATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGGAAATTAA 711021 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || ||||||||||| || ||||| ||| || || Sbjct 711931 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711872 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| || || || ||||| || | || | | || Sbjct 711871 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711812 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| || || ||||| ||||||||| ||| | | || ||||| Sbjct 711811 CAGAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 711752 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||| || || ||| |||| || ||| | |||||||| Sbjct 711751 ATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGGA 711704 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || ||||||||||| || ||||| ||| || || Sbjct 711482 ATGCAAATCTTTGTCAAAACGCTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711423 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| || || || ||||| || | || | | || Sbjct 711422 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711363 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| || || ||||| || |||||| ||| | |||| ||||| Sbjct 711362 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACTCTCTCCGACTACAAC 711303 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||| || || ||| |||| || ||| | ||||||| Sbjct 711302 ATTCAGAAAGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGG 711256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358091371176286