Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1383 131 1e-25 >seq1383 Length=1214666 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | ||| || ||||| | || |||||||| ||||||||||| ||| Sbjct 711253 ATACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCG 711312 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| |||||| || |||||||| ||| |||| | | ||| || || || Sbjct 711313 GAGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGG 711372 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| || | | ||||| |||||| | || || Sbjct 711373 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCC 711432 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||||| ||||| ||||| ||||| || ||||| Sbjct 711433 ACTTCCAGTGTGATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || ||||| | || ||||| || ||||||||||| || | || ||| ||| Sbjct 711042 CAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGACCATC 711101 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| || |||||||| ||| |||| | | ||| || || || ||||| ||||||||||| Sbjct 711102 TTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTC 711161 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||| ||| | | ||||| |||||| | || || || |||| || | || Sbjct 711162 CTGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGT 711221 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| ||||| ||||| ||||| || ||||| Sbjct 711222 TTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Score = 114 bits (126), Expect = 1e-20 Identities = 169/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 114146 TTTACAA-ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 || |||| || || || | || | ||| || ||||| | || ||||| || ||||||| Sbjct 711694 TTGACAACATTCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGT 711753 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 |||| || | ||| || |||||| || |||||||| ||| |||| | | ||| | Sbjct 711754 TGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCT 711813 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 | || || ||||| ||||||||||| ||||| || | | ||||| |||||| | Sbjct 711814 GATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTG 711873 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || |||| || | |||||||| ||||| ||||| ||||| || ||||| Sbjct 711874 AGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | ||| || ||||| | || ||||| || ||||||||||| || Sbjct 711481 ATACCTCCTCTCAGACGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCA 711540 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| |||||| || |||||||| ||| |||| | | ||| || || || Sbjct 711541 GAGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGG 711600 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| || | | ||||| |||||| | || || Sbjct 711601 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCC 711660 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || |||| || | |||||||| |||| Sbjct 711661 ACTTCCAGTGTGATGGTTTTGCCAGTCA 711688 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | ||| || ||||| | || ||||| || ||||||||||| || Sbjct 711930 ATACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCA 711989 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| | ||||| || ||| |||| | | ||| || || || Sbjct 711990 GAGAGAGTGCGGCCATCTTCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATCTGGG 712049 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| || | | ||||| |||||| | || || Sbjct 712050 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCCGAGGGCTCT 712109 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| || || || || ||||| ||||||||| Sbjct 712110 ACTTCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 712160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420095182948308