Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1521 104 4e-17 seq2869 95.1 2e-14 >seq1521 Length=375746 Score = 104 bits (114), Expect = 4e-17 Identities = 161/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| ||||| |||| || |||| |||||||| |||||||| | || Sbjct 339633 CTCTTCAATGCCATTGAGACCTTGCCATGTGTCAAAAAGAAGGCAGACTGGGCCATTAAG 339692 Query 42669 TGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||||| | | || | | || || || ||||| | || |||||| | || || || Sbjct 339693 TGGATCG-GTGACCAGGAAGCTGACTTTGGAGAGAGAGTAGTGGCCTTTGCTGCAGTGGA 339751 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGA 42786 ||| ||||||||| || ||| || ||||||||||||| ||| || ||| || | Sbjct 339752 GGGTATCTTCTTCAGTGGAAGCTTTGCTGCCATCTTCTGGCTGAAGAAGCGAGGAATC-A 339810 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 |||| || || |||||| || || || || || || || |||| Sbjct 339811 TGCCAGGGCTTACCTTCAGTAATGAGCTGATTAGTAGAGATGAGG 339855 >seq2869 Length=866877 Score = 95.1 bits (104), Expect = 2e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCAC 244975 || |||| ||| ||||| |||||| || | ||| || |||||| ||| | Sbjct 630539 TAGAGGGTCTCAAACTCCTCCCCCCAGCAGTCATGTAGCCCTGGGCACTCATGAGGGTCC 630598 Query 244976 ATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 || || ||||||| | | || |||||||| ||| |||||||| |||||||| | | Sbjct 630599 ATCAGGGTCCACTCCTCATTCTTCTCGACCCTCTTCATAAAGAGGTCAGGGATCCACATG 630658 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT-CAGCTCCAA 245094 || | ||| || |||| | |||||||| ||| ||||||||||||| | ||| || | Sbjct 630659 GCGTAGAACAGATCCCGAGCTCTCTGCTCCTCCTTGCCAGTGTTCTTCTTACAG-TCGAG 630717 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 ||| || ||||| | ||||| ||||||| ||| Sbjct 630718 AAACATGAAAACGTCTGCATGCCACGGCTCCAGGTA 630753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944248791325840