Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5973 123 2e-23 seq1034 113 4e-20 >seq5973 Length=2275 Score = 123 bits (136), Expect = 2e-23 Identities = 179/250 (72%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 20527 GTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCT 20586 |||| | |||||||| || | |||||||||||| ||||| || |||| || |||||| Sbjct 1692 GTACTCTGCCCCAAAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTCGCCCTCCTC 1633 Query 20587 TCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTT 20646 || ||| ||||||| | | ||||| |||| ||| ||||| |||||| || | Sbjct 1632 TCGGTGGTTCAGGCCGAGGTTATCAAGGAAGTCCCGGGACCCATTGGCGTCCCAGATGTG 1573 Query 20647 GACTCCTGTTCTTG-AAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCT 20705 ||| ||| |||| | || | | || | |||| |||| | |||||| ||||||| Sbjct 1572 GACACCT-TTCTCGCTCAGTTTCTTGCCATTGGTACAGCCCTGGACAAACCACAGCAGCT 1514 Query 20706 CTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCA 20765 | | ||||||| ||||| || || ||||||||||| ||||| ||||| ||||| | Sbjct 1513 CCTCAGCTACGCCCCGCCAGAAAACTCGCTTTGTGGTCAGTAATGGAAATGAGTCCCTTA 1454 Query 20766 GACTATACCT 20775 ||||||| Sbjct 1453 AGTTATACCT 1444 >seq1034 Length=671361 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 20527 GTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCT 20586 |||| | |||||||| || | |||||||||||| ||||| || |||| || |||||| Sbjct 243827 GTACTCTGCCCCAAAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTCGCCCTCCTC 243768 Query 20587 TCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTT 20646 || || |||||| | ||||||| |||| || || || |||||| || | Sbjct 243767 TCGATGGTTCAGGCCCAGGTTATCCAGGAATTCCCGCGACCCGTTGGCGTCCCAGATGTG 243708 Query 20647 GACTCCTGTTCTTGAA-AGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCT 20705 ||| ||| |||| | || | | || | |||| |||| | |||||| ||||||| Sbjct 243707 GACCCCT-TTCTCGCTCAGTTTCTTGCCATTGGTACAGCCCTGGACAAACCATAGCAGCT 243649 Query 20706 CTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754 ||| ||||||| ||||| || || ||||||||||| ||||| ||||| Sbjct 243648 CTTCAGCTACGCCCCGCCAGAAAACTCGCTTTGTGGTCAGTAATGGAAA 243600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441330544071560