Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6418 89.7 4e-13 seq5982 89.7 4e-13 seq5646 89.7 4e-13 seq5508 89.7 4e-13 seq5436 89.7 4e-13 seq5425 89.7 4e-13 seq4962 89.7 4e-13 seq749 89.7 4e-13 seq175 89.7 4e-13 >seq6418 Length=3618 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 262 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 321 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 322 ATAACTGATTTAATGAGCCATTCGCGGTTTC 352 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 262 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 321 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 322 ATAACTGATTTAATGAGCCATTCGCGGTTTC 352 >seq5982 Length=2219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 1213 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 1272 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 1273 ATAACTGATTTAATGAGCCATTCGCGGTTTC 1303 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 1213 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 1272 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 1273 ATAACTGATTTAATGAGCCATTCGCGGTTTC 1303 >seq5646 Length=1532 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 625 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 684 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 685 ATAACTGATTTAATGAGCCATTCGCGGTTTC 715 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 625 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 684 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 685 ATAACTGATTTAATGAGCCATTCGCGGTTTC 715 >seq5508 Length=1343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 731 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 790 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 791 ATAACTGATTTAATGAGCCATTCGCGGTTTC 821 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 731 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 790 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 791 ATAACTGATTTAATGAGCCATTCGCGGTTTC 821 >seq5436 Length=1215 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 471 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 412 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 411 ATAACTGATTTAATGAGCCATTCGCGGTTTC 381 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 471 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 412 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 411 ATAACTGATTTAATGAGCCATTCGCGGTTTC 381 >seq5425 Length=1210 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 745 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACAATCTAATGAACC 804 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 805 ATAACTGATTTAATGAGCCATTCGCGGTTTC 835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 745 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACAATCTAATGAACC 804 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 805 ATAACTGATTTAATGAGCCATTCGCGGTTTC 835 >seq4962 Length=600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 275 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 216 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 215 ATAACTGATTTAATGAGCCATTCGCGGTTTC 185 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 275 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 216 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 215 ATAACTGATTTAATGAGCCATTCGCGGTTTC 185 >seq749 Length=517955 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 343079 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 343138 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 343139 ATAACTGATTTAATGAGCCATTCGCGGTTTC 343169 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 343079 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 343138 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 343139 ATAACTGATTTAATGAGCCATTCGCGGTTTC 343169 >seq175 Length=6454 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 6288 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 6347 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 6348 ATAACTGATTTAATGAGCCATTCGCGGTTTC 6378 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 6288 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 6347 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 6348 ATAACTGATTTAATGAGCCATTCGCGGTTTC 6378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397025336582518