Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1383 123 6e-23 >seq1383 Length=1214666 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || ||||||| ||| ||||| || ||||| | ||||| || ||||| Sbjct 711291 TTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAA 711350 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| |||||| ||||||||||| |||||||| || || || || Sbjct 711351 GATCAATCTCTGCTGA---TCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGAC 711407 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || | || ||||| || ||||| || || || ||||| || || Sbjct 711408 GTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGCGTTTT 711467 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 711468 GACAAAGATTTGCAT 711482 Score = 123 bits (136), Expect = 6e-23 Identities = 147/198 (74%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||| | ||| ||||| || ||||| || ||||| || ||||| Sbjct 711968 TTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAACTGTTTCCCGGCGAA 712027 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| |||||| ||||||||||| |||||||| || || || || Sbjct 712028 GATCAATCTCTGCTGA---TCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGAC 712084 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || | |||||||| || || || ||||| || || || ||||| Sbjct 712085 ATTTTCAATGGTGTCCGAGGGCTCTACTTCAAGTGTAATGGTCTTGCCAGTGAGGGTCTT 712144 Query 288459 GACGAATATCTGCATTAT 288476 ||| || |||||||| || Sbjct 712145 GACAAAGATCTGCATGAT 712162 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||| | ||| ||||| || ||||||| ||||| || ||||| Sbjct 711740 TTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAA 711799 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| |||||| ||||||||||| |||||||| || || || || Sbjct 711800 GATCAATCTCTGCTGA---TCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGAC 711856 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || | || ||||| || ||||| || || || ||||| || || Sbjct 711857 GTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTT 711916 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 711917 GACAAAGATTTGCAT 711931 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||| | ||| ||||| || ||||| | ||||| || ||||| Sbjct 711063 TTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAA 711122 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| |||||| ||||||||||| |||||||| || ||||| || Sbjct 711123 GATCAATCTCTGCTGA---TCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGAC 711179 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || | || ||||| || ||||| || || || ||||| || || Sbjct 711180 ATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTT 711239 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 711240 GACAAAGATTTGCAT 711254 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 288270 ATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329 ||||| ||| ||| || || || || ||||| | ||| ||||| || ||||| | || Sbjct 711507 ATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTG 711566 Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGAT 288386 ||| || |||||||||| | ||| ||| |||||| ||||||||||| |||||||| Sbjct 711567 TTTACCGGCGAAGATCAATCTCTGCTGA---TCTGGGGGAATTCCTTCTTTGTCCTGGAT 711623 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || || || || ||||| || | || | || ||||| || ||||| || || || Sbjct 711624 CTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCC 711683 Query 288447 GGTCA 288451 |||| Sbjct 711684 AGTCA 711688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179538639407802