Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1383 116 4e-21 seq2781 107 2e-18 seq1601 105 7e-18 seq1208 100 3e-16 seq376 100 3e-16 seq1986 98.7 1e-15 seq1799 98.7 1e-15 seq1493 89.7 6e-13 >seq1383 Length=1214666 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | |||||| |||||||| | ||| ||||| ||||| ||||| |||| Sbjct 711705 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711764 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || |||||||| ||||| ||||| || | || |||||| || | || Sbjct 711765 AGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711824 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | || |||||| ||| || |||| | | | ||||| | ||||| Sbjct 711825 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACT 711884 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||||||||| || || || || |||||||||||||| Sbjct 711885 TCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Score = 114 bits (126), Expect = 1e-20 Identities = 174/248 (70%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 41961 TTATATATATTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCC 42020 ||| | || ||||||| |||||||| | |||||| |||||||| | ||| ||| Sbjct 711012 TTAAAAATGTTAATTT-----CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCC 711066 Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 || ||||| ||||| |||| || || || | || || ||||| ||||| ||||| || Sbjct 711067 TTCTGAATGTTGTAGTCAGAGAGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATC 711126 Query 42081 AGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 42140 | || |||||| || | || | | || |||||| ||| || ||||| | | Sbjct 711127 AATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCA 711186 Query 42141 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 42200 | ||||| | ||||| || | |||||||||||||| || || || || |||||| Sbjct 711187 ATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAG 711246 Query 42201 ATTTGCAT 42208 |||||||| Sbjct 711247 ATTTGCAT 711254 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | |||||| |||||||| | ||| || || ||||| ||||| || | Sbjct 711255 ACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGA 711314 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||| ||||| ||||| || | || |||||| || | || Sbjct 711315 GAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGG 711374 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || |||||| ||| || |||| | | | ||||| | ||||| Sbjct 711375 AATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCAC 711434 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||||||||| || ||||| || |||||||||||||| Sbjct 711435 TTCCAGTGTGATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | |||||| |||||||| | ||| ||||| ||||| ||||| |||| Sbjct 711483 ACCTCCTCTCAGACGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGA 711542 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||| ||||| ||||| || | || |||||| || | || Sbjct 711543 GAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGG 711602 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || |||||| ||| || |||| | | | ||||| | ||||| Sbjct 711603 AATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCCAC 711662 Query 42161 ATCGACCGTGATGGTTTTGCCCGT 42184 || | |||||||||||||| || Sbjct 711663 TTCCAGTGTGATGGTTTTGCCAGT 711686 >seq2781 Length=651635 Score = 107 bits (118), Expect = 2e-18 Identities = 89/107 (83%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTC---GGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||| |||||||| ||| | |||||||||| ||||||||||||||||||||| | Sbjct 32431 AAAAATGTTCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 32490 Query 57055 TACTCACCACTATACTACCGAGGATTGAATATATAACTTGAATATTG 57101 |||||||||||||||||||||||| | ||| ||| || |||||| Sbjct 32491 TACTCACCACTATACTACCGAGGAGT-TATAGCTAATATGTATATTG 32536 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/87 (85%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTC---GGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 || |||||| | |||||| ||| | |||||||||| ||||||||||||||||||||| Sbjct 29964 ATAAAAAATGTACTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 30023 Query 57052 ACATACTCACCACTATACTACCGAGGA 57078 ||||| ||||||||||||||||||| Sbjct 30024 GGATACTTACCACTATACTACCGAGGA 30050 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/84 (86%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTC---GGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||| | |||||| ||| | |||||||||| ||||||||||||||||||||| | Sbjct 56427 AAAAATGTACTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 56486 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||||||||||||||||| Sbjct 56487 TACTTACCACTATACTACCGAGGA 56510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 38953 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 39012 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 39013 TACTACCGAGGA 39024 >seq1601 Length=420593 Score = 105 bits (116), Expect = 7e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| ||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 123178 AAACATTGCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 123119 Query 57058 TCACCACTATACTACCGAGGATTGAATATAT 57088 | |||||||||||||||||||||| ||| || Sbjct 123118 TTACCACTATACTACCGAGGATTGCATAGAT 123088 >seq1208 Length=446669 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 364673 TTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 364614 Query 57063 ACTATACTACCGAGGATTGAATA 57085 |||||||||||||||| || ||| Sbjct 364613 ACTATACTACCGAGGAGTGGATA 364591 >seq376 Length=676522 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 173873 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 173814 Query 57067 TACTACCGAGGATTGAAT 57084 ||||||||||||||| || Sbjct 173813 TACTACCGAGGATTGCAT 173796 >seq1986 Length=802826 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 232596 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 232655 Query 57065 TATACTACCGAGGA 57078 |||||||||||||| Sbjct 232656 TATACTACCGAGGA 232669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 234070 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 234129 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 234130 TACTACCGAGGA 234141 >seq1799 Length=180028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 103213 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 103154 Query 57065 TATACTACCGAGGA 57078 |||||||||||||| Sbjct 103153 TATACTACCGAGGA 103140 >seq1493 Length=1088289 Score = 89.7 bits (98), Expect = 6e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||| | ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 675064 AAAAATTTGCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 675005 Query 57057 CTCACCACTATACTACCGA 57075 || ||||||||||||| || Sbjct 675004 CTTACCACTATACTACTGA 674986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543160794164560