Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1383 104 2e-17 >seq1383 Length=1214666 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| ||||||||||| || | || ||||| | ||||| ||||| || ||| Sbjct 711286 GTGGATTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGTTTACCG 711345 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | |||||| || || |||||||||||||| || || || || ||| Sbjct 711346 GCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTG 711405 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || || |||||||| | || | ||| ||||| |||| ||| Sbjct 711406 ACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGCGTT 711465 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 711466 TTGACAAAGATTTGCAT 711482 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || ||||||||||| || | || ||||| | ||||| ||||| || ||| Sbjct 711058 GTGGATTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGACCATCTTCCAGCTGTTTACCG 711117 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | |||||| || || |||||||||||||| || || | | || ||||| Sbjct 711118 GCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGA-TCTTGGCTTT 711176 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || || || |||||||| | || | ||| ||||| |||| || Sbjct 711177 GACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGTGT 711236 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || || |||||||| Sbjct 711237 TTTGACAAAGATTTGCAT 711254 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || ||||||||||| || | || ||||| | ||||| ||||| || ||| Sbjct 711735 GTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGTTTACCG 711794 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | |||||| || || |||||||||||||| || || || || ||| Sbjct 711795 GCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTG 711854 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || || |||||||| | || | ||| ||||| |||| ||| Sbjct 711855 ACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGTGTT 711914 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 711915 TTGACAAAGATTTGCAT 711931 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| || ||||| || ||||||||||| || | || ||||| | ||||| ||||| Sbjct 711507 ATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTG 711566 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| | || | | |||||| || || |||||||||||||| || || || || Sbjct 711567 TTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTT 711626 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| || | || || || |||||||| | || | ||| ||||| || Sbjct 711627 GGCCTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGT 711686 Query 64420 CA 64421 || Sbjct 711687 CA 711688 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || ||||||||||| || | || ||||| | ||||| | ||| || ||| Sbjct 711963 GTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAACTGTTTCCCG 712022 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | |||||| || || |||||||||||||| || || || || ||| Sbjct 712023 GCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTG 712082 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || || || ||||| | || | ||||||||| || | || Sbjct 712083 ACATTTTCAATGGTGTCCGAGGGCTCTACTTCAAGTGTAATGGTCTTGCCAGTGAGGGTC 712142 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 712143 TTGACAAAGATCTGCAT 712159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499596965255960