Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1383 96.9 2e-15 >seq1383 Length=1214666 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| ||||| || ||||| || |||||||| ||| |||| | | | ||| Sbjct 711271 AAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCT 711330 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||||| || ||| | ||||| | ||| || || ||||||||||| ||||| Sbjct 711331 TCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCC 711390 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || || |||| || || || || || || | || |||||| Sbjct 711391 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTT 711450 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| ||||| ||||| ||||||||| Sbjct 711451 TTGCCAGTCAGCGTTTTGACAAAGATTTGCATA 711483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| ||||| || || || || |||||||| || ||| | | | ||| Sbjct 711043 AAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGACCATCT 711102 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||||| || ||| | ||||| | ||| || || ||||||||||| ||||| Sbjct 711103 TCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCC 711162 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| ||| ||| |||| || || || || || || | || |||||| Sbjct 711163 TGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTT 711222 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| ||||| ||||| ||||||||| Sbjct 711223 TTGCCAGTCAGTGTTTTGACAAAGATTTGCATA 711255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| ||||| || || || || |||||||| || |||| | | | ||| Sbjct 711720 AAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCT 711779 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| ||||| || ||| | ||||| | ||| || || ||||||||||| ||||| Sbjct 711780 TCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCC 711839 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || || |||| || || || || || || | || |||||| Sbjct 711840 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTT 711899 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| ||||| ||||| ||||||||| Sbjct 711900 TTGCCAGTCAGTGTTTTGACAAAGATTTGCATA 711932 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| ||||| || || || || |||||||| || |||| | | | ||| Sbjct 711948 AAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCT 712007 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || ||||| || ||| | ||||| | ||| || || ||||||||||| ||||| Sbjct 712008 TCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCC 712067 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || ||| |||| || || || ||||| || | |||||||| Sbjct 712068 TGGATCTTGGCCTTGACATTTTCAATGGTGTCCGAGGGCTCTACTTCAAGTGTAATGGTC 712127 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATT-TGAAA 15184 || || || || || || ||||| || ||||| ||| ||||| Sbjct 712128 TTGCCAGTGAGGGTCTTGACAAAGATCTGCATGATTCTGAAA 712169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357358639578815