Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1383 127 5e-24 >seq1383 Length=1214666 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || ||||| || | ||||||||||| | ||| | |||||||| ||||| Sbjct 711729 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGT 711788 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| | | |||||| || || |||||||||| ||||| ||||| Sbjct 711789 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711848 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| ||| | |||||||| | || || |||| ||||| || || || || Sbjct 711849 GCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTC 711908 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| ||||| Sbjct 711909 AGTGTTTTGACAAAGATTTG 711928 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || || || || | ||||||||| | | ||| | |||||||||||||| Sbjct 711280 TGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGT 711339 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| | | |||||| || || |||||||||| ||||| ||||| Sbjct 711340 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711399 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| ||| | |||||||| | || || |||| ||||| || || || || Sbjct 711400 GCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTC 711459 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| ||||| Sbjct 711460 AGCGTTTTGACAAAGATTTG 711479 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || ||||| || | ||||||||||| | || | |||||||||||||| Sbjct 711052 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGACCATCTTCCAGCTGT 711111 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| | | |||||| || || |||||||||| ||||| ||||| Sbjct 711112 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711171 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || ||| | |||||||| | || || |||| ||||| || || || || Sbjct 711172 GCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTC 711231 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| ||||| Sbjct 711232 AGTGTTTTGACAAAGATTTG 711251 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || ||||| || | ||||||||||| | ||| | |||||||||| ||| Sbjct 711957 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAACTGT 712016 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| | | |||||| || || |||||||||| ||||| ||||| Sbjct 712017 TTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 712076 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | |||||| | | ||||| || | || || ||||| || ||| Sbjct 712077 GCCTTGACATTTTCAATGGTGTCCGAGGGCTCTACTTCAAGTGTAATGGTCTTGCCAGTG 712136 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || Sbjct 712137 AGGGTCTTGACAAAGATCTG 712156 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || ||||| || | ||||||||||| | ||| | |||||||||||||| Sbjct 711508 TGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTGT 711567 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| | | |||||| || || |||||||||| ||||| ||||| Sbjct 711568 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711627 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || ||| | |||||||| | || || |||| ||||| || || || || Sbjct 711628 GCCTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGT 711686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178805911318153