Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq1034 98.7 1e-15 seq5973 86.0 7e-12 >seq1034 Length=671361 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/256 (70%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 39934 ATAGTTATTATGGCGGTAGTGGTGTTGACCAGATAGCAAAAGTCATTGAACAACTGAA-A 39992 ||| ||||| || ||| || ||||||||| | ||| | ||||||| | | || | Sbjct 244251 ATATTTATTTTGTAGGTCAAGGAGTTGACCAGTTGAAAAATGCCATTGAAAAGATTAAGA 244310 Query 39993 TCAACCCCAGACGATCGCGGGATCATCGTTTCTGCCTGGAACCCTGTTGATCTTGATGAT 40052 |||||| |||||||| | ||||| ||||||||||||| || ||| || || | Sbjct 244311 ACAACCCT-GACGATCGTCGCATCATTATTTCTGCCTGGAATCCATGTGACCTAGACAAG 244369 Query 40053 ATGGCATTGCGTCCGTGTCACTGTTTCTTTCAGTTCGTTGTAATCAACGGTAAACTGT-C 40111 ||||| ||| ||| |||||| |||| |||||||| ||| |||| |||| | | Sbjct 244370 ATGGCGCTGCCTCCCTGTCACGCTTTCATTCAGTTCTATGTCTGTGACGGAGAACTCTCC 244429 Query 40112 TCTACAGTGGTATCAGCGTTCAGTTGATGTC-TTCTTAGGGTTGCCGTTCAATATCGCCT 40170 ||| ||| || ||||| |||| ||| || |||| || |||||||||| ||||| Sbjct 244430 TCT-CAGCTCTACCAGCGATCAGGCGATATCGGTCTT-GGAGTGCCGTTCAACATCGCAA 244487 Query 40171 CCTATGCTCTCCTGAC 40186 ||| | || ||||| Sbjct 244488 GTTATTCGCTTCTGAC 244503 >seq5973 Length=2275 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 39934 ATAGTTATTATGGCGGTAGTGGTGTTGACCAGATAGCAAAAGTCATTGAACAACTGAA-A 39992 ||| ||||| || ||| || ||||||||| | ||| | ||||||| | | || | Sbjct 2116 ATATTTATTTTGTAGGTCAAGGAGTTGACCAGTTGAAAAATGCCATTGAAAAGATTAAGA 2175 Query 39993 TCAACCCCAGACGATCGCGGGATCATCGTTTCTGCCTGGAACCCTGTTGATCTTGATGAT 40052 |||||| |||||||| | ||||| |||||||||||||||| ||| || || | Sbjct 2176 ACAACCCT-GACGATCGTCGCATCATTATTTCTGCCTGGAACCCATGTGACCTAGACAAG 2234 Query 40053 ATGGCATTGCGTCCGTGTCACTGTTTCTTTCAGTTC 40088 ||||| ||| ||| |||||| |||| |||||||| Sbjct 2235 ATGGCGCTGCCTCCCTGTCACGCTTTCATTCAGTTC 2270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558013772041440