Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1352 360 8e-94 seq1383 109 2e-18 seq1971 105 3e-17 >seq1352 Length=73131 Score = 360 bits (398), Expect = 8e-94 Identities = 1065/1615 (66%), Gaps = 68/1615 (4%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || |||||||| ||| | ||||| || ||||||||||| || |||| || | || || Sbjct 60091 GCGATTGGAATAGATTTGGGAACGACATTTTCATGTGTTGGAGTTTTTCAGCACGGTAAA 60150 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTT----T 451029 || || || || |||||||| ||||| ||||| ||||| || | || ||| | Sbjct 60151 GTGGAGATAATTGCAAATGATCAAGGCAATCGAACGACTCC--CA--GTTACGTTGCATT 60206 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAA--TCAATGGTAAATTCAAATGCC 451087 || || | |||||| | |||| | || || ||| |||| || || |||||| Sbjct 60207 CACAGACACGGAAAGATTGATAGGTGATGCAGCAAAAAATCAA--GTGGCTTTGAATGCC 60264 Query 451088 AAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTA 451147 | || || ||| ||| |||||||| ||||||| || | || | ||||| | ||| Sbjct 60265 AGCAATACTATATTTGACGCTAAACGACTAATTGGTCGCAAGTTTACAGATGAAAGTGTC 60324 Query 451148 CAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 ||| || | ||| || | | | | || |||||| | || || ||| | | Sbjct 60325 CAATCCGATATGAAACACTGGCCATTTAAAGTTGTAAATGATGGCGGGAAACCCAAGTTG 60384 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 | || | |||||||| |||| || | ||| | || || || || || ||||| Sbjct 60385 GAGGTGGAATATAAAGGGGAAAGAAAGAAATTTACGCCAGAGGAGATAAGCTCCATGGTA 60444 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 || || || ||||| || || || ||| | | | || || |||| || || || Sbjct 60445 CTCACCAAGATGAAGGAGACGGCGGAAGCTTTTCTGGGACAACCTGTTAGAGAAGCTGTT 60504 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | || ||||| ||||| |||||| || | || | |||| || ||||| || || Sbjct 60505 GTCACAGTTCCAGCTTACTTCAATAATTCCCAGAGAGAAGCTACCAAAGACGCTGGTGTA 60564 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||| ||||| || ||| | ||||| |||||||| ||||| ||||| || || |||||| Sbjct 60565 ATTGCAGGTTTGAAAGTTTTGCGAATCATTAATGAGCCTACTGCAGCAGCGCTTGCATAT 60624 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 ||||| ||| || ||| | | || |||||| | || | |||||| |||||||| Sbjct 60625 GGACT-GGACAA--AAACATTAGTGGTGAGAAAAATGTGTTGATCTTTGATCTTGGTGGA 60681 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG---GGTATTTGAAGTAAAGGCA 451564 |||||| |||| ||| | || || || || || ||||||| || | | Sbjct 60682 GGAACTTTTGATGTTTCGATTCTACGGATAGATGAGGGATCAATATTTGAGGTCTTGTCC 60741 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGA----ATG 451620 || ||||||||| ||| |||| || || ||| ||||| | ||| ||||| | Sbjct 60742 ACTGCTGGTGATACGCATTTAGGCGGAGAGGATTTTGATCACAGAATGGTGGATCATTTT 60801 Query 451621 GTTGAA-AACTGATGTTCAACGAAAACTAAAAGTAGATATTTCTACTAACCAAAAAGCAC 451679 ||| || || | | | ||| | | | ||| ||||||||| | || || | ||| | Sbjct 60802 GTTCAAGAATTTAAGCGCAA-GTACAATAA----AGATATTTCGAAAAATCAGAGAGCTC 60856 Query 451680 TTAGACGTCTTAAAACATCAGCA---GAAAAAGCTAAAATTACACTCAGTTCAACACAAA 451736 | || ||||| || ||| ||| || ||||| | |||||| |||| | | Sbjct 60857 TCAGGCGTCT---AAGATCTGCATGTGAGCGCGCTAAGAGAACACTC---TCAA---ATA 60907 Query 451737 CTACTAGTATAAACATTGATAGT-------TTAGTTGATGGAATGGATTATGCTACTACT 451789 | || ||||||||| ||| ||| ||| || | |||| | | || Sbjct 60908 GTTCTGAGGCAAACATTGA-AGTGGATTCATTATATGAGGGGACTGATTTTTACAGTAAA 60966 Query 451790 CTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGTATTTTTGCACGGGTA--ATGAAAC 451847 || | |||||| ||||| | ||| || |||| | | ||| | ||| Sbjct 60967 ATTTCTCGTGCTCGCTTTGAGGAGTTGTGTGCC--GATTTGTTCCGAAGTACTCTAGAAC 61024 Query 451848 CTGTTGATCAAGTATTACATGATTCTAAAATTAG-TAAAGATAAAATTGATGAAATTGTG 451906 |||| || ||| ||| ||| | ||| ||| ||| ||| | ||||| |||| Sbjct 61025 CTGTAGAAAAAGCGTTAAGAGATGC-AAAGCTAGACAAATCCAAAGTCCATGAAGTTGTC 61083 Query 451907 CTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTTGGA 451966 || || || || || || || || || ||||| ||| | | | || | || Sbjct 61084 CTGGTTGGCGGATCAACTCGGATCCCAAAAATCCAAAAGCTACTACAAGATTTCATGGGT 61143 Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 |||||| |||| ||| | |||||||||||||||||||||||||| || || || Sbjct 61144 GGAAAAGAACTCAATAAATCAATCAATCCTGATGAAGCTGTTGCATATGGGGCAGCTGTA 61203 Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGATGAAA-AATTAGGAGATATTCTGTTAGTAGA 452085 |||||||| ||| | || ||| || |||||| ||| | | ||| |||| | || || Sbjct 61204 CAAGCAGCCATTTTGACTGGTGATGAGCATGAAACAATCAAG-GATGTTCTTCTGGTTGA 61262 Query 452086 TGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAA 452145 ||| ||||| || |||||||| |||||||||| || ||| |||||||||| || || | Sbjct 61263 TGTTACACCGCTGTCTCTTGGTATTGAAACAGCAGGAGGAGTGATGACTAAATTGATAGA 61322 Query 452146 ACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACA--TTTAGTACA---GCAAGTGAT 452200 |||| || || || | |||| ||| | | |||| |||| ||| || Sbjct 61323 ACGAAATACAAAAATCCCAACT--AAAGCATCACAGATTTTTACTACATATGCA---GAC 61377 Query 452201 AACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAAT 452260 ||||| ||||| || | |||||||| |||||||| || ||||| ||||| ||| || Sbjct 61378 AACCAGCCAGGAGTCTCCATTCAAGTATTTGAAGGGGAGCGTGCTATGACCAAAGACAAC 61437 Query 452261 AATAAACTAGGAGAATTT-ACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCA 452319 |||||||||||| |||| | | | | || || ||| || | ||| |||||| Sbjct 61438 AATAAACTAGGAACATTTGAATTGAACGGA-ATACCACCTGCACCCCGAGGAGTTCCTCA 61496 Query 452320 AATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAA 452379 || ||| || | | | ||||||| |||||||| | ||||| ||| | || || Sbjct 61497 GATAGAAGTTGAATTTAACATTGATGCTAATGGTATCATGAATGTATCTGCTATGGACAA 61556 Query 452380 ATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGA 452439 | | |||||||| | ||||| || ||||| ||||| ||| |||| | ||| | Sbjct 61557 AAGTACAGGAAAATCCAACAAAATAACCATTACCAATGACAAAGGCCGTCTGAGTAAGGC 61616 Query 452440 AGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAACAA 452494 ||||| || | |||||| |||||||||| |||||||| || || |||||| || Sbjct 61617 TGATATAGACAGAATGGTGAATGAAGCAGAGAAATTCAAAGAGGAAGATGAAAAA 61671 >seq1383 Length=1214666 Score = 109 bits (120), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || |||||||||||||| ||||| || || || || || || | || Sbjct 711254 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711195 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | | ||| || || || || || ||||||||||| || ||||| Sbjct 711194 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711135 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || ||| | || ||||| || |||||||| | || | | || || || Sbjct 711134 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACACTCTCTGACTACAAC 711075 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA-TAAAT--ACATTTT 391286 ||| | ||||| | || || || || || || | ||||||||| |||| ||||||| Sbjct 711074 ATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGGAAATTAACATTTT 711015 Query 391287 T 391287 | Sbjct 711014 T 711014 Score = 100 bits (110), Expect = 1e-15 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || |||||||||||||| ||||| || || || || || || | || Sbjct 711931 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711872 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | || || || || || || ||||||||||| || ||||| Sbjct 711871 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711812 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || ||| | || ||||| || |||||||| | ||| | | || || || Sbjct 711811 CAGAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 711752 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | ||||| | || || || || || || | ||||||||| Sbjct 711751 ATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGA 711707 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || || || || || || ||||| || || ||||| ||||| || || | Sbjct 712162 ATCATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACACTTGAAGTAGAGCCC 712103 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || || | ||||||| | | || || || || || || ||||||||||| || ||| Sbjct 712102 TCGGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGAT 712043 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || || | || || ||| | |||||||| | |||||||| | ||| | | || || Sbjct 712042 CAGCAGAGATTGATCTTCGCCGGGAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTAC 711983 Query 391227 AATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || ||| | ||||| | || || || || || || | ||||||||| Sbjct 711982 AACATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGA 711935 Score = 91.5 bits (100), Expect = 6e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| |||||||| ||||| || || || || || || | || Sbjct 711482 ATGCAAATCTTTGTCAAAACGCTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711423 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | || || || || || || ||||||||||| || ||||| Sbjct 711422 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711363 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || ||| | || ||||| || |||||||| | ||| | | || || || Sbjct 711362 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACTCTCTCCGACTACAAC 711303 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | || || | || || || || || || | ||||||||| Sbjct 711302 ATTCAGAAAGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGA 711258 Score = 91.5 bits (100), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 ||||||| ||||| || || || || || || | || || | ||||||| | | || Sbjct 711688 TGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCAGACACCATTGAAAATGTCAAGG 711629 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 || || || || || ||||||||||| || ||||| || | || || ||| | || | Sbjct 711628 CCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCCGGTA 711569 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 |||| || |||||||| | ||| | | || || || ||| | ||||| | || |||| Sbjct 711568 AACAGCTGGAAGATGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAATCCACCCTTC 711509 Query 391252 ACTTAGTATTAAGACTGAGAGGA 391274 | || || || | ||||||||| Sbjct 711508 ATTTGGTCTTGCGTCTGAGAGGA 711486 >seq1971 Length=431542 Score = 105 bits (116), Expect = 3e-17 Identities = 323/491 (66%), Gaps = 10/491 (2%) Strand=Plus/Minus Query 450941 TTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGA 451000 |||||| |||| ||||| | | |||||||| |||||||| || || |||||||||||| Sbjct 11099 TTTTCA-GTGTTGGTGTATTCAAAAATGGACGAGTAGAAATCATTGCCAATGACCAAGGA 11041 Query 451001 TCACGAACTACTCCTTCATGGGTAAGTTTTACGG-ATTCA--GAAAGACTTTTAGGGCAA 451057 || | || || || | || || || | | || ||| || | | || | Sbjct 11040 AACCGTATCACCCCATCCTATGTTGCCTTCACAGCAGACAATGAACGATTGATTGGAGAT 10981 Query 451058 GCTGCTAAATCAAT--GGTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTT 451115 ||||||||| ||| | | | || || | ||||||| | | ||||| ||||||| Sbjct 10980 GCTGCTAAA--AATCAGCTGACCTCCAACCCTGAAAACACCATTTTTGATGTCAAACGTT 10923 Query 451116 TAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATG 451175 | ||||| || | | ||||| | |||| || || || | | | || | ||| Sbjct 10922 TGATTGGTCGCACCTGGGATGACAAGTCTGTTCAGAAGGACATTCAGTACTATCCTTTCA 10863 Query 451176 ATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAA 451235 | || | || | || ||||| || | || || | || ||||| ||| Sbjct 10862 AAGTCATCAACAAGAATGGAAAACCACACATCAGTGTCGAGGCCAACGGTGAGGAGAAAG 10803 Query 451236 CTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAAC 451295 ||||||||||||||| |||| | ||||||||| || |||| |||| || ||| Sbjct 10802 TCTTTGCTCCTGAAGAAGTTTCTGCCATGGTTCTTGGAAAGATGAGGGAAATTGCTGAAG 10743 Query 451296 AATATATTGGTTCTCCAGTT-ACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGAT 451354 || | |||| || | | |||| ||||| ||||| || ||||| ||||||||| Sbjct 10742 GAT-TCTTGGGCAAAAAGATCAACAATGCTGTAATCACTGTCCCTGCTTACTTCAATGAT 10684 Query 451355 GCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATT 451414 || || || || || || || || || ||| ||||||||| | ||||| | ||||| Sbjct 10683 GCCCAGCGTCAGGCCACAAAGGACGCTGGAACCATTGCTGGTCTCAATGTCATGAGAATT 10624 Query 451415 ATTAATGAACC 451425 || ||||| || Sbjct 10623 ATCAATGAGCC 10613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975524520901172