Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1521 123 3e-23 >seq1521 Length=375746 Score = 123 bits (136), Expect = 3e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| |||||| || || | || ||||| | ||||| || | Sbjct 339855 CCTCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCT 339796 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || | |||||| |||| ||||| ||||| || ||||| ||||| | Sbjct 339795 TCAGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGG 339736 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | |||| ||| |||||| | ||| || | | | ||||| || | ||||| || | Sbjct 339735 CCACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCACCGATCCACTTAATGGCCCAGTCTG 339676 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 |||||||||| |||||||||| ||||| || | ||| || || || Sbjct 339675 CCTTCTTTTTGACACATGGCAAGGTCTCAATGGCATTGAAGAGGTA 339630 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/212 (70%), Gaps = 12/212 (6%) Strand=Plus/Minus Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCA 18838 ||||| ||||||||| || || ||||||| ||| || ||| ||||||| | || |||| Sbjct 340318 TTCTAGTAGTAGTCTGTCAGCAACAAATTCAATGTACTGT-TTCATCAGTTTGCAGTTCA 340260 Query 18839 TTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCT 18898 | ||||| | ||| ||| || || || || |||||||||||||| || || || || | Sbjct 340259 TCCCTATGAGGTTACAAGGCAGAGCTTCCGTCAGAAATTCTTGTTCAATCTTGACGGCAT 340200 Query 18899 C-----TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAA 18953 | |||| | ||| || ||| |||| ||| ||| || ||||| | || Sbjct 340199 CACAGATGATTTCATATAT-----TCTTTCTTTGGATGGACGGTTTAAGAGATGGCTGAA 340145 Query 18954 CATCAAACATGCAAAATCACAATGTAGTCCCT 18985 ||||| || || || || || |||| ||||| Sbjct 340144 CATCAGGCAGGCGAAGTCGCAGTGTAATCCCT 340113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||| | || | ||| || | ||| ||||||||||| || || || ||||| ||||| Sbjct 339331 TCTTTGATGTAGGTATCAATGAGTAAGCTGTACATTTCGGAGTGGATGTTTTCCATAGCA 339272 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 ||||| ||||| || ||||||| || ||||| ||||||||| ||| ||||| || Sbjct 339271 ATCTGGAATCCATAGAAACATCGGGCCTCTGTAGCCTGTACTTCTTTACTGAATCTCTCC 339212 Query 19345 ACC 19347 ||| Sbjct 339211 ACC 339209 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||||||||| || ||||||||||| || |||||||| || | ||||| ||| Sbjct 339023 ACCAAATTTTCATTGACGATTCCATCACTGGCAGCAAAAAAAGCAAGAACATGGGAAATG 338964 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACT 19464 || |||| ||| || | | | | ||| | | | |||||| || | ||| || Sbjct 338963 AAGTGTTGTTCCTCGTCCTTCAGAGCTTCCCAGTGACCCAGATCTTTGGAGAGATCGACC 338904 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 || ||| | ||||| || || || || || || || ||||| | ||| || ||| | || Sbjct 338903 TCCTCAGCAGTCCAGAATGAGGCTTCAGCCTTCTTGTACATTTGCCAGATGTCATGGTAC 338844 Query 19525 TGTATAGGAAATATAACAAA 19544 || || || || | ||||| Sbjct 338843 TGGATTGGGAAGACTACAAA 338824 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 18654 ATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCC 18713 |||||| || |||||||| || ||||| | || | |||||||||||||| || ||||| Sbjct 340561 ATTCATGACGCCCATTTTCTGGTATTCCCCGACACGCTTTTCAAAGAAATTTGTCTTTCC 340502 Query 18714 CTCTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATA 18761 || || ||||| ||||||||| ||||| || || | ||||| || Sbjct 340501 TTCCAAGGATATGTGTTCCATAAAGTCAAAAGGGTTCTCGACATTGTA 340454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562054985108760