Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1034 205 8e-48 seq5973 118 9e-22 >seq1034 Length=671361 Score = 205 bits (226), Expect = 8e-48 Identities = 294/409 (72%), Gaps = 4/409 (1%) Strand=Plus/Minus Query 29722 TTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTT-ATCCTCAG-TGTGGGAAAGGGTCTGG 29779 ||||| ||||| | || || |||| || |||| ||| || | ||||||||| || | Sbjct 244677 TTAAAATCGTCAATGTCCTTCACC-TCACGTTTGATCAAGAGCTTTGGGAAAGG-TCGAG 244620 Query 29780 GCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTC 29839 | | |||| ||||||| | ||||| ||||| | ||||| || |||||| || ||||||| Sbjct 244619 GTTTTCTCTGGAGCTGAATTTTCAGTGGTTCAATGTGATTCACGTAGACATGTGCGTCTC 244560 Query 29840 CCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGA 29899 |||| ||||| || || || || |||| || || || ||||| || |||||||| || | Sbjct 244559 CCAGTGTGTGAACGAAATCACCAGGTTTGAGTCCTGTTACGTGGGCTATCATGTAAGTCA 244500 Query 29900 GGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGT 29959 | || || || || |||||||| || || || || || || || || || || | ||||| Sbjct 244499 GAAGCGAATAACTTGCGATGTTGAACGGCACTCCAAGACCGATATCGCCTGATCGCTGGT 244440 Query 29960 AGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAG 30019 |||||||| | ||||| |||||||| | || || |||||| | | ||| || |||| Sbjct 244439 AGAGCTGAGAGGAGAGTTCTCCGTCACAGACATAGAACTGAATGAAAGCGTGACAGGGAG 244380 Query 30020 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTT 30079 | || ||||| | | | ||| || |||||||| | | |||||||| | || | Sbjct 244379 GCAGCGCCATCTTGTCTAGGTCACATGGATTCCAGGCAGAAATAATGATGCGACGATCGT 244320 Query 30080 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 30128 | ||||||||| | || || | ||| |||| || ||| || || || Sbjct 244319 CAGGGTTGTTCTTAATCTTTTCAATGGCATTTTTCAACTGGTCAACTCC 244271 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||||||||| || ||||| | ||||||||| || || || || |||||||| Sbjct 243836 CATGTCTTTGTACTCTGCCCCAAAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTC 243777 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || | || | | |||| || |||| || || | || ||||||||||| Sbjct 243776 GCCCTCCTCTCGATGGTTCAGGCCCAGGTTATCCAGGAATTCCCGCGACCCGTTGGCGTC 243717 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30329 |||||| | ||||| |||||| || | ||| || || | || ||| ||||| Sbjct 243716 CCAGATGTGGACCCCTTTCTCGCTCAGTTTCTTGCCATTGGTACAGCCCTGGACAAACCA 243657 Query 30330 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 |||||||| || | ||| || ||| || || | ||| || || || | ||||| Sbjct 243656 TAGCAGCTCTTCAGCTACGCCCCGCCAGAAAACTCGCTTTGTGGTCAGTAATGGAAA 243600 >seq5973 Length=2275 Score = 118 bits (130), Expect = 9e-22 Identities = 177/250 (71%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||||||||| || ||||| | ||||||||| || || || || |||||||| Sbjct 1701 CATGTCTTTGTACTCTGCCCCAAAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTC 1642 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || | ||| | | ||| || || | ||||| | ||| || |||||||| Sbjct 1641 GCCCTCCTCTCGGTGGTTCAGGCCGAGGTTATCAAGGAAGTCCCGGGACCCATTGGCGTC 1582 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30329 |||||| | || || |||||| || | ||| || || | || ||| ||||| Sbjct 1581 CCAGATGTGGACACCTTTCTCGCTCAGTTTCTTGCCATTGGTACAGCCCTGGACAAACCA 1522 Query 30330 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA-CT 30388 |||||||||||| | ||| || ||| || || | ||| || || || | ||||| Sbjct 1521 CAGCAGCTCCTCAGCTACGCCCCGCCAGAAAACTCGCTTTGTGGTCAGTAATGGAAATGA 1462 Query 30389 GTCCCTTGAG 30398 ||||||| || Sbjct 1461 GTCCCTTAAG 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408579457973207