Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2182 82.4 6e-11 >seq2182 Length=491743 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || ||| ||| || || || ||||| ||||| Sbjct 281164 CCTCCTCTCAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 281223 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||||||| ||||||||||| ||||| | |||||| || | |||| Sbjct 281224 AGAGTACGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGCCTCTGTTGGTCAGGGGGA 281283 Query 48660 ACGCC 48664 | ||| Sbjct 281284 ATGCC 281288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380902041736857