Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1521 100 5e-16 seq2869 95.1 2e-14 >seq1521 Length=375746 Score = 100 bits (110), Expect = 5e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247 || || ||||||| || | || || |||||||| || || || || ||| |||| Sbjct 339820 AGCCCTGGCATGATTCCTCGCTTCTTCAGCCAGAAGATGGCAGCAAAGCTTCCACTGAAG 339761 Query 48248 AAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCT 48307 ||||| ||||||||||| || || || | |||||||| || ||| | || ||| Sbjct 339760 AAGATACCCTCCACTGCAGCAAAGGCCACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCA 339701 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCC 48367 |||||| || ||||||||||||||||| |||| ||||||| ||||| ||||| Sbjct 339700 CCGATCCACTTAATGGCCCAGTCTGCCTTCTTTTTGACACATGGCAAGGTCTCAATGGCA 339641 Query 48368 CGGAAGAG 48375 |||||| Sbjct 339640 TTGAAGAG 339633 >seq2869 Length=866877 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGG--TAAAAGTTTGAAGTGTAGGGCTCG 212972 || |||||| || ||||| ||||| || ||||| |||| ||| ||||| | ||| Sbjct 628124 TACCTGGAACTCCCCTGACAGCAC--TCGTCTGGAGTAAATGTTGCTGGTGTATGCCTCT 628181 Query 212973 ATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGG 213032 ||| || ||||||||||| ||||| || || |||||||||||||||||||| || Sbjct 628182 ATGGATTCATTGTTCCCCAGGATCTGAGCGGTTGAGGCTGTGGGCATGGGAGCCAACAAC 628241 Query 213033 AGACTGTTCCTCACTCCGTG 213052 || |||||||| | ||||| Sbjct 628242 AGGCTGTTCCTTATGCCGTG 628261 Score = 84.2 bits (92), Expect = 4e-11 Identities = 137/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 213775 ATGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCC 213833 ||| ||| | ||| ||| |||| ||| | | | |||| ||| |||| ||| || ||||| Sbjct 630589 ATGAGGGTC-CATCAGGGTCCACTCCTCATTCTTCTC-GACCCTCTTCATAAAGAGGTCA 630646 Query 213834 GGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTG 213893 |||| ||||| ||| |||||| |||| | ||| ||| ||| |||| ||| || Sbjct 630647 GGGATCCACATGGCGTAGAACAGATCCCGAGCTCTCTGCTCCTCCTTGCCAGTGTTCTTC 630706 Query 213894 CG-CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGC 213952 ||| || ||||| || | ||| || ||||||||||||| ||| |||||||| || Sbjct 630707 TTACAG-TCGAGAAACATGAAAACGTCTGCATGCCACGGCTCCAGGTAAATGGCAAACGC 630765 Query 213953 GCCCGGCCTCT 213963 || || |||| Sbjct 630766 ACCTGGTCTCT 630776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931443617378560