Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1521 104 4e-17 seq2869 93.3 8e-14 >seq1521 Length=375746 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25794 TGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAA 25853 |||||| ||| | | || | |||| | |||||| |||||||| ||||||||| Sbjct 339641 TGCCATTGAGACCTTGCCATGTGTCAAAAAGAAGGCAGACTGGGCCATTAAGTGGATCGG 339700 Query 25854 CAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913 |||| ||| ||||| ||| | | || ||||||||||| |||||||| ||||| Sbjct 339701 TGACCAGGAAGCTGACTTTGGAGAGAGAGTAGTGGCCTTTGCTGCAGTGGAGGGTATCTT 339760 Query 25914 TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCT 25973 ||||| || ||||| |||||||||||||| ||| || || | |||||| ||||| Sbjct 339761 CTTCAGTGGAAGCTTTGCTGCCATCTTCTGGCTGAAGAAGCGAGGAATCATGCCAGGGCT 339820 Query 25974 GTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 ||| || ||||| || || || || |||| Sbjct 339821 TACCTTCAGTAATGAGCTGATTAGTAGAGATGAGG 339855 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| || |||||||||||| ||||||| |||||||| ||||| || |||||||||||| Sbjct 340466 AACCCTTTTGACTTTATGGAACACATATCCTTGGAAGGAAAGACAAATTTCTTTGAAAAG 340525 Query 26305 AGGGTCGGCGACTATCA 26321 | ||||| || || || Sbjct 340526 CGTGTCGGGGAATACCA 340542 >seq2869 Length=866877 Score = 93.3 bits (102), Expect = 8e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 |||||| |||| | || || | | |||||||| ||| |||||||| |||||||||| Sbjct 630598 CATCAGGGTCCACTCCTCATTCTTCTCGACCCTCTTCATAAAGAGGTCAGGGATCCACAT 630657 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT-CAGATCCA 222122 || | || ||||| | | | |||||||||| ||| |||| ||| | ||| || | Sbjct 630658 GGCGTAGAACAGATCCCGAGCTCTCTGCTCCTCCTTGCCAGTGTTCTTCTTACAG-TCGA 630716 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||| |||| ||| || |||||||||||||| || | ||| | || || |||| || Sbjct 630717 GAAACATGAAAACGTCTGCATGCCACGGCTCCAGGTAAATGGCAAACGCACCTGGTCTCT 630776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928755874720960