Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1438 95.1 4e-14 seq1521 89.7 2e-12 >seq1438 Length=34942 Score = 95.1 bits (104), Expect = 4e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| || ||||||||||| |||||||| | || |||| || || | || | || Sbjct 2623 CCAACGGCGTCAATTTCGTCGATGAAAATAATGCAAGGAGCATGGCGTTTACCATTGACA 2682 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | |||| || | || || |||| |||||| |||| || ||||| ||||| | Sbjct 2683 AAAAGGTCTCGCACCCTAGAAGCGCCAACGCCAACAAACATCTCCACAAAATCAGAGCCC 2742 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | | || | || | || || ||||||||||| || ||| | |||| ||| ||||| Sbjct 2743 GACA-TAGAGAAAAAGGGAACCTTCGCTTCGCCTGCAACAGCCTTTGCCAAAAGCGTCTT 2801 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 ||||| ||||| | || | | | ||||||||| || Sbjct 2802 GCCTGTGCCAGGAGCGCCAACAAGCAAAACTCCCTTGGG 2840 >seq1521 Length=375746 Score = 89.7 bits (98), Expect = 2e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| | |||||||| || || | || || ||||| ||||| || || ||| Sbjct 338824 TTTGTAGTCTTCCCAATCCAGTACCATGACATCTGGCAAATGTACAAGAAGGCTGAAGCC 338883 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | ||| |||||| | || || ||| | |||||||| | | ||||||||||| || Sbjct 338884 TCATTCTGGACTGCTGAGGAGGTCGATCTCTCCAAAGATCTGGGTCACTGGGAAGCTCTG 338943 Query 133196 ACTGGGGATGAAAAACATTTTATTT-CTATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | | || ||| |||| || |||| | ||| || | || ||||||||||| |||||||| Sbjct 338944 AAGGACGAGGAACAACACTTCATTTCCCATG-TTCTTGCTTTTTTTGCTGCCAGTGATGG 339002 Query 133255 TATTGTTCTTGAAAATTT 133272 || || ||||||||| Sbjct 339003 AATCGTCAATGAAAATTT 339020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471673169159083