Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3293 111 2e-18 >seq3293 Length=201333 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| || || || || || |||||||| || | || || Sbjct 6984 GCTTGGCCAATTCACCGGGCAGGAGAAGACGGACTGCAGTCTGGATTTCTCTGCTGGTGA 7043 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| ||||| ||| ||||||| | |||| | |||| | Sbjct 7044 TGGTTGAGCGTTTGTTGTAGTGGGCCAGGCGGGAAGCCTCGGCGGCGATTCTCTCGAAGA 7103 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || || ||||||| ||| | |||| |||| | || ||| |||| Sbjct 7104 TGTCATTGACGAAAGAATTCATGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGT 7163 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| || || ||||||||| Sbjct 7164 GCACCTGCTTCAGGACTTTGTAGATG 7189 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || ||| || ||||| || || |||||||| || | || || Sbjct 16303 GCTTGGCCAATTCACCTGGCAGGAGAAGGCGGACTGCAGTCTGGATTTCTCTGCTGGTGA 16362 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| ||||||||| |||||| | | | || | |||| | Sbjct 16363 TGGTTGAGCGTTTGTTGTAGTGGGCCAGACGGGAGGCCTCAGCGGCAATTCTCTCGAAGA 16422 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || || ||||||| ||| | |||| |||| | || ||| |||| Sbjct 16423 TGTCATTGACGAAAGAATTCATGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGT 16482 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| || | || ||||||||| Sbjct 16483 GCACCTGTTTCAAGACTTTGTAGATG 16508 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || ||| || ||||| || || |||||||| || | || || Sbjct 57081 GCTTGGCCAATTCACCTGGCAGGAGAAGGCGGACTGCAGTCTGGATTTCTCTGCTGGTGA 57140 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| ||||||||| |||||| | | | || | |||| | Sbjct 57141 TGGTTGAGCGTTTGTTGTAGTGGGCCAGACGGGAGGCCTCAGCGGCAATTCTCTCGAAGA 57200 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || || ||||||| ||| | |||| |||| | || ||| |||| Sbjct 57201 TGTCATTGACGAAAGAATTCATGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGT 57260 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| || | || ||||||||| Sbjct 57261 GCACCTGTTTCAAGACTTTGTAGATG 57286 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || ||| || ||||| || || |||||||| || | || || Sbjct 64631 GCTTGGCCAATTCACCTGGCAGGAGAAGGCGGACTGCAGTCTGGATTTCTCTGCTGGTGA 64690 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| ||||||||| |||||| | | | || | |||| | Sbjct 64691 TGGTTGAGCGTTTGTTGTAGTGGGCCAGACGGGAGGCCTCAGCGGCAATTCTCTCGAAGA 64750 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || || ||||||| ||| | |||| |||| | || ||| |||| Sbjct 64751 TGTCATTGACGAAAGAATTCATGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGT 64810 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| || | || ||||||||| Sbjct 64811 GCACCTGTTTCAAGACTTTGTAGATG 64836 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || ||| || ||||| || || |||||||| || | || || Sbjct 72171 GCTTGGCCAATTCACCTGGCAGGAGAAGGCGGACTGCAGTCTGGATTTCTCTGCTGGTGA 72230 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| ||||||||| |||||| | | | || | |||| | Sbjct 72231 TGGTTGAGCGTTTGTTGTAGTGGGCCAGACGGGAGGCCTCAGCGGCAATTCTCTCGAAGA 72290 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || || ||||||| ||| | |||| |||| | || ||| |||| Sbjct 72291 TGTCATTGACGAAAGAATTCATGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGT 72350 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| || | || ||||||||| Sbjct 72351 GCACCTGTTTCAAGACTTTGTAGATG 72376 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || ||| || ||||| || || |||||||| || | || || Sbjct 79721 GCTTGGCCAATTCACCTGGCAGGAGAAGGCGGACTGCAGTCTGGATTTCTCTGCTGGTGA 79780 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| ||||||||| |||||| | | | || | |||| | Sbjct 79781 TGGTTGAGCGTTTGTTGTAGTGGGCCAGACGGGAGGCCTCAGCGGCAATTCTCTCGAAGA 79840 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || || ||||||| ||| | |||| |||| | || ||| |||| Sbjct 79841 TGTCATTGACGAAAGAATTCATGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGT 79900 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| || | || ||||||||| Sbjct 79901 GCACCTGTTTCAAGACTTTGTAGATG 79926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106510666592903