Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1383 150 2e-31 >seq1383 Length=1214666 Score = 150 bits (166), Expect = 2e-31 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || ||||| || || || ||||| || || | Sbjct 711254 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711195 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||| |||||||||||||| || || ||||| Sbjct 711194 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711135 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | |||||||| ||||| ||||||||||| ||| ||| | || | || || || | Sbjct 711134 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCG-CACAC-TCTCTGACTACA 711077 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||| |||||||| || || || ||||| ||||| || | ||||| Sbjct 711076 ACATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGG 711028 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||| || |||||||| || | Sbjct 712159 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACACTTGAAGTAGAGCCCTCG 712100 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| |||||||||||||| || || ||||| Sbjct 712099 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 712040 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| |||||||||||| |||| ||| | | | || || || ||| Sbjct 712039 CAGAGATTGATCTTCGCCGGGAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTACAAC 711980 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || ||||| ||||| || | ||||| Sbjct 711979 ATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGG 711933 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | |||||||| || || ||||| || || || ||||| || || | Sbjct 711482 ATGCAAATCTTTGTCAAAACGCTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711423 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| |||||||||||||| || || ||||| Sbjct 711422 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711363 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| ||||| ||||||||||| ||| | | | || || || ||| Sbjct 711362 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACTCTCTCCGACTACAAC 711303 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || || || ||||| ||||| || | ||||| Sbjct 711302 ATTCAGAAAGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGG 711256 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || ||||| || || || ||||| || || | Sbjct 711931 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711872 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| |||||||||||||| || || ||||| Sbjct 711871 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711812 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| ||||| |||||||| || ||| | | | || || || ||| Sbjct 711811 CAGAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 711752 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || ||||| ||||| || | ||||| Sbjct 711751 ATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGG 711705 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || ||||| || || || ||||| || || | ||||| | |||| || || Sbjct 711686 ACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCAGACACCATTGAAAATGTCAAGGCC 711627 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| |||||||||||||| || || ||||| || | |||||||| ||||| ||| Sbjct 711626 AAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCCGGTAAA 711567 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | | || || || |||||||| |||||||| || || || Sbjct 711566 CAGCTGGAAGATGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAATCCACCCTTCAT 711507 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || | ||||| Sbjct 711506 TTGGTCTTGCGTCTGAGAGGAGG 711484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449854527928520