Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3293 150 3e-30 seq2701 111 2e-18 seq1521 87.8 3e-11 >seq3293 Length=201333 Score = 150 bits (166), Expect = 3e-30 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || ||||| |||||| |||||| ||| ||| ||| Sbjct 6945 TGTACTTGGTGACAGCCTTGGTGCCTTCAGAGACAGCGTGCTTGGCCAATTCACCGGGCA 7004 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || |||||||| || | | || ||| || ||| ||||| | Sbjct 7005 GGAGAAGACGGACTGCAGTCTGGATTTCTCTGCTGGTGATGGTTGAGCGTTTGTTGTAGT 7064 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||||| | |||| | |||| ||||| ||||| || || |||| Sbjct 7065 GGGCCAGGCGGGAAGCCTCGGCGGCGATTCTCTCGAAGATGTCATTGACGAAAGAATTCA 7124 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| |||||||||||||| || || |||| Sbjct 7125 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGCTTCAGGACTTTGT 7184 Query 1485710 A 1485710 | Sbjct 7185 A 7185 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || |||||||| || ||||| || ||| |||||| ||| || ||| Sbjct 16264 TGTACTTGGTGACAGCTTTGGTACCTTCAGAGACAGCATGCTTGGCCAATTCACCTGGCA 16323 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| || || |||||||| || | | || ||| || ||| ||||| | Sbjct 16324 GGAGAAGGCGGACTGCAGTCTGGATTTCTCTGCTGGTGATGGTTGAGCGTTTGTTGTAGT 16383 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | | | || | |||| ||||| ||||| || || |||| Sbjct 16384 GGGCCAGACGGGAGGCCTCAGCGGCAATTCTCTCGAAGATGTCATTGACGAAAGAATTCA 16443 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 16444 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 16503 Query 1485710 A 1485710 | Sbjct 16504 A 16504 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || |||||||| || ||||| || ||| |||||| ||| || ||| Sbjct 57042 TGTACTTGGTGACAGCTTTGGTACCTTCAGAGACAGCATGCTTGGCCAATTCACCTGGCA 57101 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| || || |||||||| || | | || ||| || ||| ||||| | Sbjct 57102 GGAGAAGGCGGACTGCAGTCTGGATTTCTCTGCTGGTGATGGTTGAGCGTTTGTTGTAGT 57161 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | | | || | |||| ||||| ||||| || || |||| Sbjct 57162 GGGCCAGACGGGAGGCCTCAGCGGCAATTCTCTCGAAGATGTCATTGACGAAAGAATTCA 57221 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 57222 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 57281 Query 1485710 A 1485710 | Sbjct 57282 A 57282 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || ||||| || ||| |||||| ||| || ||| Sbjct 64592 TGTACTTGGTGACAGCTTTGGTTCCTTCAGAGACAGCATGCTTGGCCAATTCACCTGGCA 64651 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| || || |||||||| || | | || ||| || ||| ||||| | Sbjct 64652 GGAGAAGGCGGACTGCAGTCTGGATTTCTCTGCTGGTGATGGTTGAGCGTTTGTTGTAGT 64711 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | | | || | |||| ||||| ||||| || || |||| Sbjct 64712 GGGCCAGACGGGAGGCCTCAGCGGCAATTCTCTCGAAGATGTCATTGACGAAAGAATTCA 64771 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 64772 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 64831 Query 1485710 A 1485710 | Sbjct 64832 A 64832 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || ||||| || ||| |||||| ||| || ||| Sbjct 72132 TGTACTTGGTGACAGCTTTGGTTCCTTCAGAGACAGCATGCTTGGCCAATTCACCTGGCA 72191 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| || || |||||||| || | | || ||| || ||| ||||| | Sbjct 72192 GGAGAAGGCGGACTGCAGTCTGGATTTCTCTGCTGGTGATGGTTGAGCGTTTGTTGTAGT 72251 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | | | || | |||| ||||| ||||| || || |||| Sbjct 72252 GGGCCAGACGGGAGGCCTCAGCGGCAATTCTCTCGAAGATGTCATTGACGAAAGAATTCA 72311 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 72312 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 72371 Query 1485710 A 1485710 | Sbjct 72372 A 72372 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || ||||| || ||| |||||| ||| || ||| Sbjct 79682 TGTACTTGGTGACAGCTTTGGTTCCTTCAGAGACAGCATGCTTGGCCAATTCACCTGGCA 79741 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| || || |||||||| || | | || ||| || ||| ||||| | Sbjct 79742 GGAGAAGGCGGACTGCAGTCTGGATTTCTCTGCTGGTGATGGTTGAGCGTTTGTTGTAGT 79801 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | | | || | |||| ||||| ||||| || || |||| Sbjct 79802 GGGCCAGACGGGAGGCCTCAGCGGCAATTCTCTCGAAGATGTCATTGACGAAAGAATTCA 79861 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| | || ||| ||||||||||| || | || |||| Sbjct 79862 TGATGCTCATGGCCTTGCTGGAAACTCCAGTGTCAGGGTGCACCTGTTTCAAGACTTTGT 79921 Query 1485710 A 1485710 | Sbjct 79922 A 79922 >seq2701 Length=760008 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| ||||||||||| || || || ||||| | |||||||| ||| | | Sbjct 617655 TGTATTTGGTCACGGCCTTGGTTCCTTCACTTACAGCGTGTTTTGCCAGTTCTCCGGGAA 617596 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||| ||||| ||| | | ||| || |||||||| | Sbjct 617595 GCAGCAGGCGCACCGCCGTCTGAATCTCTCGGCTACTGATTGTAGAACGCTTGTTGTAGG 617536 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| | |||||||| | || || |||| || ||| |||||||| ||||| Sbjct 617535 TCGCCAGTCTCGAGGCCTCGGCAGCAATCCGCTCGAACACGTCATTGACAAAACTGTTCA 617476 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||| | || ||||| || || || || ||| | | || |||| Sbjct 617475 TGATTGACATGGCTTTACTCGAAATGCCGGTATCTGGATGAACTTGCCTCAATACTTTGT 617416 Query 1485710 A 1485710 | Sbjct 617415 A 617415 >seq1521 Length=375746 Score = 87.8 bits (96), Expect = 3e-11 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| || || ||||| || ||||| || || || || || ||||| | || ||| Sbjct 339008 ACGATTCCATCACTGGCAGCAAAAAAAGCAAGAACATGGGAAATGAAGTGTTGTTCCTCG 338949 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAA 796320 || | || | ||||||| || || | ||| ||||||||||| || ||||| Sbjct 338948 TCCTTCAGAGCTTCCCAGTGACCCAGATCTTTGGAGAGATCGACCTCCTCAGCAGTCCAG 338889 Query 796321 AAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGA 796380 || ||||| || ||||| |||||||| | ||| || ||||| |||| ||||| | Sbjct 338888 AATGAGGCTTCAGCCTTCTTGTACATTTGCCAGATGTCATGGTACTGGATTGGGAAGACT 338829 Query 796381 ACAAAGCG 796388 |||||||| Sbjct 338828 ACAAAGCG 338821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915431677237301