Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1383 163 6e-35 seq1488 95.1 2e-14 seq7634 84.2 4e-11 >seq1383 Length=1214666 Score = 163 bits (180), Expect = 6e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||||| ||||| || || || || || ||||| ||||| || || || |||| Sbjct 711931 TACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAG 711990 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| | ||||| || || ||||| | ||| || |||||||| | Sbjct 711991 AGAGAGTGCGGCCATCTTCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGG 712050 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || || || ||||| || || ||||||||||| || || || |||| Sbjct 712051 GAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCCGAGGGCTCTA 712110 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||| | || || |||||||| || | ||||| ||||| |||||||| ||| Sbjct 712111 CTTCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGATT 712163 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||||| ||||| || || || || || ||||||||||| || || || || | Sbjct 711254 TACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGG 711313 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||| || ||||| || || ||||| | ||| || |||||||| | Sbjct 711314 AGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGG 711373 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || || || ||||| || || || |||||||| || || || || | Sbjct 711374 GAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCA 711433 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || || ||||| |||| ||| || ||||| || ||||| Sbjct 711434 CTTCCAGTGTGATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| ||||| || || || || || ||||| ||||| || || || ||||| Sbjct 711028 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711087 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || ||||| || || ||||| | ||| || |||||||| || Sbjct 711088 AGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711147 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || ||||| ||||| ||||||||||| || || || || ||| Sbjct 711148 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACT 711207 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || ||||| |||| || || ||||| || ||||| Sbjct 711208 TCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||||| ||||| || || || || || ||||| ||||| || || || |||| Sbjct 711482 TACCTCCTCTCAGACGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAG 711541 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||| || ||||| || || ||||| | ||| || |||||||| | Sbjct 711542 AGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGG 711601 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || || || ||||| || || ||||||||||| || || || || | Sbjct 711602 GAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCCA 711661 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCA 82788 |||||| || || || ||||| |||| Sbjct 711662 CTTCCAGTGTGATGGTTTTGCCAGTCA 711688 >seq1488 Length=210545 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || ||||||||||| || ||||||||||| || ||| ||||| || Sbjct 27046 ATACCTTCCTTGTCCTGAATCTTTGCCTTGACATTTTCAATAGTGTCAGAGGGTTCCACC 27105 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || ||||| ||||||||||| |||||||| Sbjct 27106 TCAAGGGTGATGGTTTTACCCGTCAATGTCTTTACAAAGATCTGCAT 27152 >seq7634 Length=1324113 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 198515 AGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATT 198574 ||||||||||||||| ||||| ||| | || || | || |||||||| || || || Sbjct 1109917 AGGTTGTATGTGGTCCATTTGTGGAATTCACGACCAAGGCTGGAAAGAGCGAGACATTTT 1109858 Query 198575 TGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATT 198634 |||||| || | || |||||||||| || | |||| || |||||||| || ||||| Sbjct 1109857 TGGGAAAATCCGCTACATGAATTATGCTGGATGCAAGAGGAAGTTTGATGTGGCAGCATT 1109798 Query 198635 T 198635 | Sbjct 1109797 T 1109797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981730852376401