Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1383 129 4e-25 seq2182 82.4 5e-11 >seq1383 Length=1214666 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| || |||||||| || ||| ||||| || |||||||| ||||| Sbjct 711255 ACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGA 711314 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| ||||| ||||| || ||||| | |||||||||| | || Sbjct 711315 GAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGG 711374 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || | | || | || | |||||| | |||| Sbjct 711375 AATTCCTTCTTTGTCCTGGATCTT-GGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCA 711433 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | |||||| |||||||| |||||| Sbjct 711434 CTTCCAGTGTGATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCATA 711483 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| || |||||||| || ||| || || || |||||||| || ||| Sbjct 711028 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711087 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || |||| ||||| ||||| || ||||| | |||||||||| | || Sbjct 711088 AGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711147 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | || |||| || | |||||| | ||||| Sbjct 711148 ATTCCTTCTTTGTCCTGGATCTT-GGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCAC 711206 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || | ||||| |||||||| |||||| Sbjct 711207 TTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCATA 711255 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| || |||||||| || ||| || || || |||||||| || || Sbjct 711932 ACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGA 711991 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || ||||| ||||| ||||| || ||||| | |||||||||| | || Sbjct 711992 GAGAGTGCGGCCATCTTCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGG 712051 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || | | |||| || | |||||| | || | Sbjct 712052 AATTCCTTCTTTGTCCTGGATCTT-GGCCTTGACATTTTCAATGGTGTCCGAGGGCTCTA 712110 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || || || || | || || |||||||||||||| Sbjct 712111 CTTCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 712159 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| || |||||||| || ||| || || || |||||||| || ||| Sbjct 711705 CCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 711764 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||||| ||||| || ||||| | |||||||||| | || Sbjct 711765 AGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGA 711824 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | | || | || | |||||| | ||||| Sbjct 711825 ATTCCTTCTTTGTCCTGGATCTT-GGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCAC 711883 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || | ||||| |||||||| |||||| Sbjct 711884 TTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCATA 711932 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| || |||||||| || ||| || || || |||||||| || || Sbjct 711483 ACCTCCTCTCAGACGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGA 711542 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| ||||| ||||| || ||||| | |||||||||| | || Sbjct 711543 GAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGG 711602 Query 33642 CACACCTTCTTTGTC 33656 | ||||||||||| Sbjct 711603 AATTCCTTCTTTGTC 711617 >seq2182 Length=491743 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||||| ||| | ||||| || || ||| ||| || || |||||||| || | Sbjct 281162 CACCTCCTCTCAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 281221 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 |||| || || | || ||||| ||||| ||||||||||||| | ||| || || Sbjct 281222 AGAGAGTACGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGCCTCTGTTGGTC 281276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328673317433280