Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1383 113 1e-19 >seq1383 Length=1214666 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||||||||| || || ||||| ||||| |||||||||| || ||| Sbjct 711479 CAAATCTTTGTCAAAACGCTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCAGAC 711420 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || |||||||||||| || || || Sbjct 711419 ACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAG 711360 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||||||||| || ||| |||||||||| | ||| | |||| |||||| | Sbjct 711359 AGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACTCTCTCCGACTACAACATT 711300 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 |||||||| || || || || Sbjct 711299 CAGAAAGAATCCACCCTCCA 711280 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| || || || ||||| ||||| |||||||||| || ||| Sbjct 711251 CAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCAGAC 711192 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||| || || |||||||||||| || || || Sbjct 711191 ACCATTGAAAATGTCAAAGCCAA-GATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCA 711133 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | ||||||||||| || ||| |||||||||| | || | | || |||||| | Sbjct 711132 GAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACACTCTCTGACTACAACAT 711073 Query 206352 CCAGAAAGAGTCTACTCTTCA 206372 ||||| || || || || || Sbjct 711072 TCAGAAGGAATCCACCCTCCA 711052 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| || || || ||||| ||||| |||||||||| || ||| Sbjct 711928 CAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCAGAC 711869 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || |||||||||||| || || || Sbjct 711868 ACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAG 711809 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||||||||| || ||| | |||||||| | ||| | | || |||||| | Sbjct 711808 AGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACTCTCTCTGACTACAACATT 711749 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| || || || || || Sbjct 711748 CAGAAGGAATCCACCCTCCA 711729 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||| |||||||||| || ||||| | ||| || ||| Sbjct 711686 ACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCAGACACCATTGAAAATGTCAAGGCC 711627 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || |||||||||||| || || || ||| | ||||||||||| || Sbjct 711626 AAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCCGGTAAA 711567 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| |||||||||| | ||| | | || |||||| | ||||| || || || ||||| Sbjct 711566 CAGCTGGAAGATGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAATCCACCCTTCA 711508 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || || || | ||||| || || ||| Sbjct 712156 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACACTTGAAGTAGAGCCCTCGGAC 712097 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || |||||||||||| || || || Sbjct 712096 ACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAG 712037 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||||||||| || |||||||||||||| | ||| | | || |||||| | Sbjct 712036 AGATTGATCTTCGCCGGGAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTACAACATT 711977 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| || || || || || Sbjct 711976 CAGAAGGAATCCACCCTCCA 711957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181704826816939