Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1383 109 5e-19 seq2869 82.4 7e-11 >seq1383 Length=1214666 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || ||||| ||||||||||||||| | || || | Sbjct 711268 CGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA 711327 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||||| |||| | | ||| |||||||| || || |||||||| Sbjct 711328 TCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTG 711387 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | ||||||||||| | || | Sbjct 711388 TCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATG 711447 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| ||||| | || || ||||| Sbjct 711448 GTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || || || |||||||||||||| | || || | Sbjct 711040 CGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGACCA 711099 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||||| |||| | | ||| |||||||| || || |||||||| Sbjct 711100 TCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTG 711159 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | ||| | || || | ||||||||||| | || | Sbjct 711160 TCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATG 711219 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| ||||| | || || ||||| Sbjct 711220 GTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || || || |||||||||||||| | || || | Sbjct 711717 CGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCA 711776 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||||| |||| | | ||| |||||||| || || |||||||| Sbjct 711777 TCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTG 711836 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | ||||||||||| | || | Sbjct 711837 TCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATG 711896 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| ||||| | || || ||||| Sbjct 711897 GTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || || || |||||||||||||| | || || | Sbjct 711496 CGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCA 711555 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||||| |||| | | ||| |||||||| || || |||||||| Sbjct 711556 TCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTG 711615 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | ||||||||||| | || | Sbjct 711616 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATG 711675 Query 132089 GTTTTACCAGTCA 132101 ||||| ||||||| Sbjct 711676 GTTTTGCCAGTCA 711688 >seq2869 Length=866877 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 147166 GCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTT 147225 |||||||||||||||||||| | ||| ||||||| ||||| || ||||||||||||| Sbjct 628728 GCCAATTCACAGCTTGCCTCTAAAGCTGCATAGTAAATGGTCTCAAAGATTTGTTTGTTT 628787 Query 147226 AGGA-CGGTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCA 147283 | || | || || || || || || || | ||| | || || | ||||| || |||| Sbjct 628788 AAGAGCTGT-GCCTCCTCACTTTC-AAATGGATACCTCATCAGGATGAAGGCGTCCGCCA 628845 Query 147284 AACCCTGGATACCGACGCCGATAGGTCGATG 147314 |||||| | ||| | || || |||| ||| Sbjct 628846 GACCCTGTACACCTATTCCAATTGGTCTATG 628876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476565570435240