Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1034 176 5e-39 seq5973 84.2 3e-11 >seq1034 Length=671361 Score = 176 bits (194), Expect = 5e-39 Identities = 311/451 (69%), Gaps = 2/451 (0%) Strand=Plus/Minus Query 146772 CTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAATC 146831 ||| || |||| |||||| ||| || || || | ||| || | | ||||||| Sbjct 244744 CTACACTGCCATTTCCATGGCGATTTTTGGATGAGGATTGTACCCAACAATCTCAAAATC 244685 Query 146832 TTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGG 146891 ||| | |||||||| ||||||| |||| | ||| |||||| ||||| || Sbjct 244684 TTCAAATTTAAAATCGTCAATGTCCTTCACCTCACGTTTGATCAAGAGCTTTGGGAAAGG 244625 Query 146892 TCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGC 146951 ||| || || || |||||||||||||| || || | ||| || | |||||| || || Sbjct 244624 TCGAGGTTTTCTCTGGAGCTGAATTTTCAGTGGTTCAATGTGATTCACGTAGACATGTGC 244565 Query 146952 GTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTA 147011 ||| ||||| ||||| || || || || || || || || || |||||||| | |||||| Sbjct 244564 GTCTCCCAGTGTGTGAACGAAATCACCAGGTTTGAGTCCTGTTACGTGGGCTATCATGTA 244505 Query 147012 GGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCT 147071 || || ||||| || || || |||||||| || || || || || || || || || | Sbjct 244504 AGTCAGAAGCGAATAACTTGCGATGTTGAACGGCACTCCAAGACCGATATCGCCTGATCG 244445 Query 147072 CTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCA 147131 |||||| ||||| | ||||| || ||||| || || ||||| | ||| || Sbjct 244444 CTGGTAGAGCTGAGAGGAGAGTTCTCCGTCACAGACATAGAACTGAATGAAAGCGTGACA 244385 Query 147132 CGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCT 147191 || ||||||||||| | ||||| || |||||||| || | | | || | Sbjct 244384 GGGAGGCAGCGCCATCTTGTCTAGGTCACATGGATTCCAGGCAGAAATAATGATGCGAC- 244326 Query 147192 GCTC-TCGGGGTTCCTCTTAATCTCTTCGAT 147221 | || || ||||| ||||||||| ||| || Sbjct 244325 GATCGTCAGGGTTGTTCTTAATCTTTTCAAT 244295 >seq5973 Length=2275 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| || | ||||||||| || || ||||| ||||||||||| || || ||| Sbjct 1685 GCCCCAAAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTCGCCCTCCTCTCGGTG- 1627 Query 147343 GAGAAGCCCGCCCGCTT---GAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACT 147399 | || ||| | || || || || ||||||| | ||||||||||||| || Sbjct 1626 GTTCAGGCCG--AGGTTATCAAGGAAGTCCCGGGACCCATTGGCGTCCCAGATGTGGACA 1569 Query 147400 CCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCC 147459 || || || || | ||| | || ||||| ||| ||||| ||||||||||| Sbjct 1568 CCTTTCTCGCTCAGTTTCTTGCCATTGGTACAGCCCTGGACAAACCACAGCAGCTCCTCA 1509 Query 147460 AAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCT 147512 || |||| ||| || || | ||| |||||||| | || || |||||| Sbjct 1508 GCTACGCCCCGCCAGAAAACTCGCTTTGTGGTCAGTAATGGAAATGAGTCCCT 1456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583432138317600