Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3293 122 1e-21 seq1521 93.3 6e-13 >seq3293 Length=201333 Score = 122 bits (134), Expect = 1e-21 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || || ||||||||||| ||| || | ||| | |||| |||| || Sbjct 7188 ATCTACAAAGTCCTGAAGCAGGTGCA-CCCTGA--CACTGG---AGTTTCCAGCAAGGCC 7135 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || ||||| ||||| |||| | |||| | ||||||| Sbjct 7134 ATGAGCATCATGAATTCTTTCGTCAATGACATCTTCGAGAGAATCGCCGCCGAGGCTTCC 7075 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || |||||| ||| || ||| || | || |||||||| || || Sbjct 7074 CGCCTGGCCCACTACAACAAACGCTCAACCATCACCAGCAGAGAAATCCAGACTGCAGTC 7015 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||| ||| ||| |||||| |||||| ||||| || ||||||| Sbjct 7014 CGTCTTCTCCTGCCCGGTGAATTGGCCAAGCACGCTGTCTCTGAAGGCACCA 6963 Score = 95.1 bits (104), Expect = 2e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || | || |||||||| ||| || | ||| | |||| |||| || Sbjct 16507 ATCTACAAAGTCTTGAAACAGGTGCA-CCCTGA--CACTGG---AGTTTCCAGCAAGGCC 16454 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || ||||| ||||| |||| | || | | | |||||| Sbjct 16453 ATGAGCATCATGAATTCTTTCGTCAATGACATCTTCGAGAGAATTGCCGCTGAGGCCTCC 16394 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||| ||| || ||| || | || |||||||| || || Sbjct 16393 CGTCTGGCCCACTACAACAAACGCTCAACCATCACCAGCAGAGAAATCCAGACTGCAGTC 16334 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||| || ||| |||||| ||| || ||||| || || |||| Sbjct 16333 CGCCTTCTCCTGCCAGGTGAATTGGCCAAGCATGCTGTCTCTGAAGGTACCA 16282 Score = 95.1 bits (104), Expect = 2e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || | || |||||||| ||| || | ||| | |||| |||| || Sbjct 57285 ATCTACAAAGTCTTGAAACAGGTGCA-CCCTGA--CACTGG---AGTTTCCAGCAAGGCC 57232 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || ||||| ||||| |||| | || | | | |||||| Sbjct 57231 ATGAGCATCATGAATTCTTTCGTCAATGACATCTTCGAGAGAATTGCCGCTGAGGCCTCC 57172 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||| ||| || ||| || | || |||||||| || || Sbjct 57171 CGTCTGGCCCACTACAACAAACGCTCAACCATCACCAGCAGAGAAATCCAGACTGCAGTC 57112 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||| || ||| |||||| ||| || ||||| || || |||| Sbjct 57111 CGCCTTCTCCTGCCAGGTGAATTGGCCAAGCATGCTGTCTCTGAAGGTACCA 57060 Score = 95.1 bits (104), Expect = 2e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || | || |||||||| ||| || | ||| | |||| |||| || Sbjct 64835 ATCTACAAAGTCTTGAAACAGGTGCA-CCCTGA--CACTGG---AGTTTCCAGCAAGGCC 64782 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || ||||| ||||| |||| | || | | | |||||| Sbjct 64781 ATGAGCATCATGAATTCTTTCGTCAATGACATCTTCGAGAGAATTGCCGCTGAGGCCTCC 64722 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||| ||| || ||| || | || |||||||| || || Sbjct 64721 CGTCTGGCCCACTACAACAAACGCTCAACCATCACCAGCAGAGAAATCCAGACTGCAGTC 64662 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||| || ||| |||||| ||| || ||||| || || |||| Sbjct 64661 CGCCTTCTCCTGCCAGGTGAATTGGCCAAGCATGCTGTCTCTGAAGGAACCA 64610 Score = 95.1 bits (104), Expect = 2e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || | || |||||||| ||| || | ||| | |||| |||| || Sbjct 72375 ATCTACAAAGTCTTGAAACAGGTGCA-CCCTGA--CACTGG---AGTTTCCAGCAAGGCC 72322 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || ||||| ||||| |||| | || | | | |||||| Sbjct 72321 ATGAGCATCATGAATTCTTTCGTCAATGACATCTTCGAGAGAATTGCCGCTGAGGCCTCC 72262 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||| ||| || ||| || | || |||||||| || || Sbjct 72261 CGTCTGGCCCACTACAACAAACGCTCAACCATCACCAGCAGAGAAATCCAGACTGCAGTC 72202 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||| || ||| |||||| ||| || ||||| || || |||| Sbjct 72201 CGCCTTCTCCTGCCAGGTGAATTGGCCAAGCATGCTGTCTCTGAAGGAACCA 72150 Score = 95.1 bits (104), Expect = 2e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || | || |||||||| ||| || | ||| | |||| |||| || Sbjct 79925 ATCTACAAAGTCTTGAAACAGGTGCA-CCCTGA--CACTGG---AGTTTCCAGCAAGGCC 79872 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || ||||| ||||| |||| | || | | | |||||| Sbjct 79871 ATGAGCATCATGAATTCTTTCGTCAATGACATCTTCGAGAGAATTGCCGCTGAGGCCTCC 79812 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||| ||| || ||| || | || |||||||| || || Sbjct 79811 CGTCTGGCCCACTACAACAAACGCTCAACCATCACCAGCAGAGAAATCCAGACTGCAGTC 79752 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||| || ||| |||||| ||| || ||||| || || |||| Sbjct 79751 CGCCTTCTCCTGCCAGGTGAATTGGCCAAGCATGCTGTCTCTGAAGGAACCA 79700 >seq1521 Length=375746 Score = 93.3 bits (102), Expect = 6e-13 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 1455736 CCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAA 1455795 ||||| |||||||| | ||||| |||| ||||| || ||| |||||||| || | Sbjct 338816 CCCGA--CGCTTTGTAGTCTTCCCAATCCAGTACCATGACATCTGGCAAATGTAC-AAGA 338872 Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| || ||||| || ||||| || ||||||||||| ||| | || || |||| Sbjct 338873 AGGCTGAAGCCTCATTCTGGACTGCTGAGGAGGTCGATCTCTCCAAAGATCTGGGTCACT 338932 Query 1455856 GGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCC 1455915 ||| | |||| ||||| || | || ||||| || || || | ||||||| || Sbjct 338933 GGGAAGCTCTGAAGGACGAGGAACAACACTTCATTTCCCATGTTCTTG-CTTTTTTTGCT 338991 Query 1455916 GCCAGCGATGGCATCGT 1455932 ||||| ||||| ||||| Sbjct 338992 GCCAGTGATGGAATCGT 339008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177072475372758