Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1383 93.3 4e-14 >seq1383 Length=1214666 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || |||||| || | | | ||| |||||||| | || ||||| ||||||||||| Sbjct 711021 TTAATTTCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTA 711080 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 || | | || || | || |||||||| ||||| || || ||||| | |||||| || Sbjct 711081 GTCAGAGAGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATC 711140 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | |||| | || |||||| |||||| || | | || | | ||||| | Sbjct 711141 TGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGG 711200 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| |||| ||||| ||||| || |||| ||||| ||||| || ||||| Sbjct 711201 CTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| |||||||| | || || || ||||||||||| |||| | || || | || Sbjct 711270 CAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATC 711329 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||||||| ||||| || || ||||| | |||||| || | |||| | || ||||| Sbjct 711330 TTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTC 711389 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||| | || | | ||||| | ||||| |||| ||||| || Sbjct 711390 CTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGT 711449 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || |||| ||||| ||||| || ||||| Sbjct 711450 TTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| |||||||| | || ||||| ||||||||||| || | | || || | || Sbjct 711719 CAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATC 711778 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || ||||| ||||| || || ||||| | |||||| || | |||| | || ||||| Sbjct 711779 TTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTC 711838 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||| | || | | ||||| | ||||| |||| ||||| || Sbjct 711839 CTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGT 711898 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || |||| ||||| ||||| || ||||| Sbjct 711899 TTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450750442147720