Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1521 116 5e-21 seq2869 107 3e-18 >seq1521 Length=375746 Score = 116 bits (128), Expect = 5e-21 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||||||||| | || ||| || || || || ||||| | || ||||| | Sbjct 339855 CCTCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCT 339796 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || ||||||||||| |||| |||||||| || || ||||| ||||| | Sbjct 339795 TCAGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGG 339736 Query 39759 CAACAAGTCTCTCTCC---GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | || | ||||||||| || | | | | | |||||||| ||||| || | Sbjct 339735 CCACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCACCGATCCACTTAATGGCCCAGTCTG 339676 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 | ||||| || ||||| |||| || || || ||||| ||||| |||| Sbjct 339675 CCTTCTTTTTGACACATGGCAAGGTCTCAATGGCATTGAAGAGGTAAT 339628 Score = 107 bits (118), Expect = 3e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||||||||||||| || ||||||||||| || |||||||| || | ||||| ||| | Sbjct 339022 CCAAATTTTCATTGACGATTCCATCACTGGCAGCAAAAAAAGCAAGAACATGGGAAATGA 338963 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 | | || ||| ||| ||| | ||||| | | |||||| || | ||| || | Sbjct 338962 AGTGTTGTTCCTCGTCCTTCAGAGCTTCCCAGTGACCCAGATCTTTGGAGAGATCGACCT 338903 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 | ||||| ||||| || || || || ||||| |||||||| | ||| || ||| | || | Sbjct 338902 CCTCAGCAGTCCAGAATGAGGCTTCAGCCTTCTTGTACATTTGCCAGATGTCATGGTACT 338843 Query 40179 GTATTGGAAAAATAACAAA 40197 | ||||| || | ||||| Sbjct 338842 GGATTGGGAAGACTACAAA 338824 >seq2869 Length=866877 Score = 107 bits (118), Expect = 3e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 68948 ATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATG 69007 |||| | || ||||||||||| || ||| |||| || | |||||| ||||||||||| | Sbjct 628693 ATCCTTGGTAGGTTTCATAAGGCCCATCCCGTTCTGCCAATTCACAGCTTGCCTCTAAAG 628752 Query 69008 CACCGTAATAAATTGTTTCGAAAATCT-TCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 | | || ||||| || || || || | | | || ||| | ||||| || ||| || Sbjct 628753 CTGCATAGTAAATGGTCTCAAAGATTTGTTTGTTTAAGAGC-TGTGCCTCCTCACTTTCA 628811 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 |||||||| | || || || || || |||| ||||| || || || || || ||| Sbjct 628812 AATGGATACCTCATCAGGATGAAGGCGTCCGCCAGACCCTGTACACCTATTCCAATTGGT 628871 Query 69127 CTATGTCTCTTATTTGAACTTTCAGC 69152 ||||||||| |||| || || ||||| Sbjct 628872 CTATGTCTCATATTAGACCTCTCAGC 628897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686843037068760