Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1034 145 6e-30 seq1521 104 2e-17 >seq1034 Length=671361 Score = 145 bits (160), Expect = 6e-30 Identities = 268/393 (68%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 41022 GCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAG 41081 || ||||| ||| ||| || | |||||| |||| || ||||| || |||| Sbjct 244343 GCCTGGAATCCATGTGACCTAGACAAGATGGCGCTGCCTCCCTGTCACGCTTTCATTCAG 244402 Query 41082 TTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGA 41141 || || || || | || ||||| || | ||| | || || ||||||| || || || Sbjct 244403 TTCTATGTCTGTGACGGAGAACTCTCCTCTCAGCTCTACCAGCGATCAGGCGATATCGGT 244462 Query 41142 CTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTT 41201 || || || ||||| ||||| || |||||| | || || || || ||||| || ||||| Sbjct 244463 CTTGGAGTGCCGTTCAACATCGCAAGTTATTCGCTTCTGACTTACATGATAGCCCACGTA 244522 Query 41202 ACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAAT 41261 || | ||||||||||| || |||||||| | ||||| | |||| | ||| | ||| Sbjct 244523 ACAGGACTCAAACCTGGTGATTTCGTTCACACACTGGGAGACGCACATGTCTACGTGAAT 244582 Query 41262 CACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTT 41321 ||||| || || | | | || || |||||||| |||| || |||| ||| | Sbjct 244583 CACATTGAACCACTGAAAATTCAGCTCCAGAGAAAACCTCGACCTTTCCCAAAGCTCTTG 244642 Query 41322 ATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGAT 41381 || ||||| | || | ||||||| |||||| | || ||||||| || | Sbjct 244643 ATCAAACGTGAGGTGAAGGACATTGACGATTTTAAATTTGAAGATTTTGAGATTGTTGGG 244702 Query 41382 TACAATCCGTACCCTAAAATCCACATGGACATG 41414 |||||||| | || |||||| |||||| ||| Sbjct 244703 TACAATCCTCATCCAAAAATCGCCATGGAAATG 244735 >seq1521 Length=375746 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| || || ||||| || || |||||||| |||||||||||||| || || | || Sbjct 338824 TTTGTAGTCTTCCCAATCCAGTACCATGACATCTGGCAAATGTACAAGAAGGCTGAAGCC 338883 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 ||||| ||||| || || || || ||| | | ||||| | | || ||| || | Sbjct 338884 TCATTCTGGACTGCTGAGGAGGTCGATCTCTCCAAAGATCTGGGTCACTGGGAAGCTCTG 338943 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || | ||| |||| || || || ||| | || ||||||||||| || || || Sbjct 338944 AAGGACGAGGAACAACACTTCATTTCCCATGTTCTTGCTTTTTTTGCTGCCAGTGATGGA 339003 Query 43880 ATAGTCAATGAAAATTTGGT 43899 || ||||||||||||||||| Sbjct 339004 ATCGTCAATGAAAATTTGGT 339023 Score = 93.3 bits (102), Expect = 3e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 ||||| ||||| ||||||||| | || || |||||||| || ||||| || |||||||| Sbjct 340466 AACCCTTTTGACTTTATGGAACACATATCCTTGGAAGGAAAGACAAATTTCTTTGAAAAG 340525 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATGA 44588 || || || ||||| ||| |||||||||||||| Sbjct 340526 CGTGTCGGGGAATACCAGAAAATGGGCGTCATGA 340559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 43929 CAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGT 43988 |||| || |||||||| ||||| || || ||||| || ||||| || || || ||||||| Sbjct 339241 CAGAGGCCCGATGTTTCTATGGATTCCAGATTGCTATGGAAAACATCCACTCCGAAATGT 339300 Query 43989 ACAGTCTTCTGATAGATACGTACATCAAAGA 44019 |||| | || || ||||| ||||||||||| Sbjct 339301 ACAGCTTACTCATTGATACCTACATCAAAGA 339331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397418899842295