Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1034 105 6e-18 >seq1034 Length=671361 Score = 105 bits (116), Expect = 6e-18 Identities = 186/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 ||||||||| || || || ||| | || || ||||| ||| | || || || || Sbjct 244369 GATGGCGCTGCCTCCCTGTCACGCTTTCATTCAGTTCTATGTCTGTGACGGAGAACTCTC 244428 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 || |||||||| || ||||| || || || || | || |||||||||||||| || || Sbjct 244429 CTCTCAGCTCTACCAGCGATCAGGCGATATCGGTCTTGGAGTGCCGTTCAACATCGCAAG 244488 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||| | || || || |||||||| || || || || | ||||| || | || Sbjct 244489 TTATTCGCTTCTGACTTACATGATAGCCCACGTAACAGGACTCAAACCTGGTGATTTCGT 244548 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCT 34815 || || |||| || || ||| ||||| |||| ||||| || | || || ||||| Sbjct 244549 TCACACACTGGGAGACGCACATGTCTACGTGAATCACATTGAACCACTGAAAATTCAGCT 244608 Query 34816 GCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846 || || | || ||||| ||||| ||||| Sbjct 244609 CCAGAGAAAACCTCGACCTTTCCCAAAGCTC 244639 Score = 105 bits (116), Expect = 6e-18 Identities = 186/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 ||||| ||||| ||||| || | || || ||||| || || | || ||||| || Sbjct 244639 GAGCTTTGGGAAAGGTCGAGGTTTTCTCTGGAGCTGAATTTTCAGTGGTTCAATGTGATT 244580 Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGAC 6618 || ||||| ||| || || |||| || || || | || ||||| | || || Sbjct 244579 CACGTAGACATGTGCGTCTCCCAGTGTGTGAACGAAATCACCAGGTTTGAGTCCTGTTAC 244520 Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 || || |||||||| || || || | ||||| || |||||||||||||| || | || Sbjct 244519 GTGGGCTATCATGTAAGTCAGAAGCGAATAACTTGCGATGTTGAACGGCACTCCAAGACC 244460 Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG 6738 || || || ||||| || |||||||| |||| || || || | ||| ||||| || Sbjct 244459 GATATCGCCTGATCGCTGGTAGAGCTGAGAGGAGAGTTCTCCGTCACAGACATAGAACTG 244400 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 || | ||| || || || ||||||||| Sbjct 244399 AATGAAAGCGTGACAGGGAGGCAGCGCCATC 244369 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 34219 ATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTG 34278 |||||| | ||||| || || || || | |||| |||||| | || |||||||| || Sbjct 243599 ATTTCCATTACTGACCACAAAGCGAGTTTTCTGGCGGGGCGTAGCTGAAGAGCTGCTATG 243658 Query 34279 GTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGG---GGGGTGAAGATCTG 34335 ||| || ||| || || |||| | || | | | ||||| | ||||| Sbjct 243659 GTTTGTCCAGGGCTGTACCAATGGCAAGAAACT---GAGCGAGAAAGGGGTCCACATCTG 243715 Query 34336 GGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTT--CCCATCTCGGGAGGAG 34393 |||||| ||||||| || || || ||||| || | ||| | ||| ||| |||||| Sbjct 243716 GGACGCCAACGGGTCGCGGGAATTCCTGGATAACCTGGGCCTGAACCA--TCGAGAGGAG 243773 Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||||| |||| || || || || ||||||||| | || |||||||| ||||| Sbjct 243774 GGCGACCTGGGTCCAGTTTATGGTTTCCAGTGGCGCCATTTTGGGGCAGAGTA 243826 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| |||||||| || | ||||||||| || || || || |||| |||||||||||| Sbjct 243826 TACTCTGCCCCAAAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTCGCCCTCCTCT 243767 Query 6959 CGAGATGGG--AACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCT 7016 ||| ||| | ||| | || ||||| || || || ||||||| ||||||||||| | Sbjct 243766 CGA--TGGTTCAGGCCCAGGTTATCCAGGAATTCCCGCGACCCGTTGGCGTCCCAGATGT 243709 Query 7017 TCACCCC---CCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073 ||||| | | | || | |||| || || ||| || ||||| |||| Sbjct 243708 GGACCCCTTTCTCGCTC---AGTTTCTTGCCATTGGTACAGCCCTGGACAAACCATAGCA 243652 Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAAT 7126 |||| || | |||||| |||| | || || || || ||||| | |||||| Sbjct 243651 GCTCTTCAGCTACGCCCCGCCAGAAAACTCGCTTTGTGGTCAGTAATGGAAAT 243599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448219484478480