Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1034 136 3e-27 >seq1034 Length=671361 Score = 136 bits (150), Expect = 3e-27 Identities = 225/322 (70%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 118374 AAAATCTTCAAACTTAAAGTCTTCTATATTTTTGATATCCTTGTTTATGGATAG-TGTGG 118432 |||||||||||| ||||| || || || | || | || || || | || | ||| Sbjct 244690 AAAATCTTCAAATTTAAAATCGTCAATGTCCTTCACCTCACGTTTGATCAAGAGCTTTGG 244631 Query 118433 GAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGA 118492 |||| || |||| | || ||| || | ||||||||| ||||||||||||| |||| Sbjct 244630 GAAA-GGTCGAGGTTTTCTCTGGAGCTGAATTTTCAGTGGTTCAATGTGATTCACGTAGA 244572 Query 118493 CATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAA 118552 |||| || || || | ||| || | ||| ||||||||| | || ||||| | ||| || | Sbjct 244571 CATGTGCGTCTCCCAGTGTGTGAACGAAATCACCAGGTTTGAGTCCTGTTACGTGGGCTA 244512 Query 118553 TCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTG 118612 ||||||| |||| | || || || | || || || || || ||||| || || Sbjct 244511 TCATGTAAGTCAGAAGCGAATAACTTGCGATGTTGAACGGCACTCCAAGACCGATATCGC 244452 Query 118613 CTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGA 118672 |||||| |||||| | || | ||||| || |||| ||||| |||||| | | Sbjct 244451 CTGATCGCTGGTAGAGCTGAGAGGAGAGTTCTCCGTCACAGACATAGAACTGAATGAAAG 244392 Query 118673 TGTGACATGGAGGCAGAACCAT 118694 |||||| |||||||| |||| Sbjct 244391 CGTGACAGGGAGGCAGCGCCAT 244370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414438111051676