Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1383 127 5e-24 seq1488 93.3 1e-13 >seq1383 Length=1214666 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| ||||| || ||||| || || | || || | |||||||||||||| Sbjct 711280 TGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGT 711339 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | | || || || || |||| |||||| |||||||||||||| Sbjct 711340 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711399 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| |||||||| ||| || || || || ||||| || || || || Sbjct 711400 GCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTC 711459 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | ||||| Sbjct 711460 AGCGTTTTGACAAAGATTTGCAT 711482 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || || || ||||| || || | || || | |||||||||| ||| Sbjct 711957 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAACTGT 712016 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | | || || || || |||| |||||| |||||||||||||| Sbjct 712017 TTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 712076 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| |||||||| ||| || || || || || || ||||| || ||| Sbjct 712077 GCCTTGACATTTTCAATGGTGTCCGAGGGCTCTACTTCAAGTGTAATGGTCTTGCCAGTG 712136 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 712137 AGGGTCTTGACAAAGATCTGCAT 712159 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || || || ||||| || || | || || | |||||||||||||| Sbjct 711052 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGACCATCTTCCAGCTGT 711111 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | | || || || || |||| |||||| |||||||||||||| Sbjct 711112 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711171 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| |||||||| ||| || || || || ||||| || || || || Sbjct 711172 GCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTC 711231 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | ||||| Sbjct 711232 AGTGTTTTGACAAAGATTTGCAT 711254 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || || || ||||| || || | || || | |||||||| ||||| Sbjct 711729 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGT 711788 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | | || || || || |||| |||||| |||||||||||||| Sbjct 711789 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711848 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| |||||||| ||| || || || || ||||| || || || || Sbjct 711849 GCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTC 711908 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | ||||| Sbjct 711909 AGTGTTTTGACAAAGATTTGCAT 711931 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| ||||| || || || ||||| || || | || || | |||||||||||||| Sbjct 711508 TGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTGT 711567 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | | || || || || |||| |||||| |||||||||||||| Sbjct 711568 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711627 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| |||||||| ||| || || || || ||||| || || || || Sbjct 711628 GCCTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGT 711686 >seq1488 Length=210545 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||| |||||| || || ||||| || ||||||||| ||| ||||| Sbjct 27049 CCTTCCTTGTCCTGAATCTTTGCCTTGACATTTTCAATAGTGTCAGAGGGTTCCACCTCA 27108 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || ||||| | ||||||||||| | |||||| Sbjct 27109 AGGGTGATGGTTTTACCCGTCAATGTCTTTACAAAGATCTGCAT 27152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159038251327535