Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1383 136 9e-27 >seq1383 Length=1214666 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| ||||||||||| || | ||||| |||| | ||| | |||||||| ||||| Sbjct 711280 TGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGT 711339 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || || || || || ||||| ||||| ||||| |||||||| Sbjct 711340 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711399 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || ||| ||||||||||||| ||||| || | ||||| || ||||| ||| Sbjct 711400 GCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTC 711459 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | || | |||||| Sbjct 711460 AGCGTTTTGACAAAGATTTGCAT 711482 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| |||||||| || || | ||||| || | | ||| | |||||||||||||| Sbjct 711729 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGT 711788 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || || || || || ||||| ||||| ||||| |||||||| Sbjct 711789 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711848 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || ||| ||||||||||||| ||||| || | ||||| || ||||| ||| Sbjct 711849 GCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTC 711908 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | || | |||||| Sbjct 711909 AGTGTTTTGACAAAGATTTGCAT 711931 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| |||||||| || || | ||||| || | | || | |||||||| ||||| Sbjct 711052 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGACCATCTTCCAGCTGT 711111 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || || || || || ||||| ||||| ||||| |||||||| Sbjct 711112 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711171 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| ||| ||||||||||||| ||||| || | ||||| || ||||| ||| Sbjct 711172 GCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTC 711231 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | || | |||||| Sbjct 711232 AGTGTTTTGACAAAGATTTGCAT 711254 Score = 120 bits (132), Expect = 7e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| || || | ||||| || | | ||| | |||||||| ||||| Sbjct 711508 TGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTGT 711567 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || || || || || ||||| ||||| ||||| |||||||| Sbjct 711568 TTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 711627 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| ||||||||||||| ||||| || | ||||| || ||||| ||| Sbjct 711628 GCCTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTTGCCAGTC 711687 Query 225691 A 225691 | Sbjct 711688 A 711688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192414175795346