Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1034 192 5e-44 seq5973 96.9 3e-15 >seq1034 Length=671361 Score = 192 bits (212), Expect = 5e-44 Identities = 291/409 (71%), Gaps = 4/409 (1%) Strand=Plus/Minus Query 29567 TTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTT-ATCCTCAG-TGTGGGAAAGGGTCTGG 29624 ||||| ||||| | | || |||| || |||| ||| || | ||||||||| || | Sbjct 244677 TTAAAATCGTCAATGTCCTTCACC-TCACGTTTGATCAAGAGCTTTGGGAAAGG-TCGAG 244620 Query 29625 GCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTC 29684 | | |||| ||||||||| |||| ||||| | ||| | | |||||| || || |||| Sbjct 244619 GTTTTCTCTGGAGCTGAATTTTCAGTGGTTCAATGTGATTCACGTAGACATGTGCGTCTC 244560 Query 29685 CCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGA 29744 |||| ||||| || || || || |||| || || || ||||| || |||||||| || | Sbjct 244559 CCAGTGTGTGAACGAAATCACCAGGTTTGAGTCCTGTTACGTGGGCTATCATGTAAGTCA 244500 Query 29745 GGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGT 29804 | || || || || |||||||| || ||||| || || || || || ||||| | ||||| Sbjct 244499 GAAGCGAATAACTTGCGATGTTGAACGGCACTCCAAGACCGATATCGCCTGATCGCTGGT 244440 Query 29805 AGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAG 29864 ||||||| | ||||| |||||||| | || || |||||| | || || || |||| Sbjct 244439 AGAGCTGAGAGGAGAGTTCTCCGTCACAGACATAGAACTGAATGAAAGCGTGACAGGGAG 244380 Query 29865 GAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTT 29924 | || ||||| | | ||| || ||||||||| | | |||||||| | || | Sbjct 244379 GCAGCGCCATCTTGTCTAGGTCACATGGATTCCAGGCAGAAATAATGATGCGACGATCGT 244320 Query 29925 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 29973 | ||||||||| | || || | ||| |||| || ||| || || || Sbjct 244319 CAGGGTTGTTCTTAATCTTTTCAATGGCATTTTTCAACTGGTCAACTCC 244271 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| | ||||||||| || || || || |||||||| ||||| || | || | | | Sbjct 243814 AAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTCGCCCTCCTCTCGATGGTTCAGG 243755 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| || |||| || || | || ||||||||||||||||| | ||||| |||||| Sbjct 243754 CCCAGGTTATCCAGGAATTCCCGCGACCCGTTGGCGTCCCAGATGTGGACCCCTTTCTCG 243695 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 || | ||| || || | || ||| ||||| |||||||| || | ||| || Sbjct 243694 CTCAGTTTCTTGCCATTGGTACAGCCCTGGACAAACCATAGCAGCTCTTCAGCTACGCCC 243635 Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 ||| || || | ||| || || || | ||||| Sbjct 243634 CGCCAGAAAACTCGCTTTGTGGTCAGTAATGGAAA 243600 >seq5973 Length=2275 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| | ||||||||| || || || || |||||||| ||||| || | ||| | | | Sbjct 1679 AAATGGCGCCACTGGAAACCATAAACTGGACCCAGGTCGCCCTCCTCTCGGTGGTTCAGG 1620 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || || || | ||||| | ||| || |||||||||||||| | || || |||||| Sbjct 1619 CCGAGGTTATCAAGGAAGTCCCGGGACCCATTGGCGTCCCAGATGTGGACACCTTTCTCG 1560 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 || | ||| || || | || ||| ||||||||||||||||| | ||| || Sbjct 1559 CTCAGTTTCTTGCCATTGGTACAGCCCTGGACAAACCACAGCAGCTCCTCAGCTACGCCC 1500 Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA-CTGTCCCTTGAG 30243 ||| || || | ||| || || || | ||||| ||||||| || Sbjct 1499 CGCCAGAAAACTCGCTTTGTGGTCAGTAATGGAAATGAGTCCCTTAAG 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406125287076874